No. words: 1373; after pruning: 1347


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.5 (1,1:653)  636  0.00 0.00 0.00  USDA003F_C01_BG607230As01P004D05D11F1_002.ab1        1   654 (32)  C USDA003R_C01_BG607230As01P004D05D11R1_002.ab1   (33)   654     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1  C USDA003R_C01_BG607230As01P004D05D11R1_002.ab1   687 
   45    USDA003F_C01_BG607230As01P004D05D11F1_002.ab1    12 
   53  C USDA003R_C01_BG607230As01P004D05D11R1_002.ab1   635 
   57    USDA003F_C01_BG607230As01P004D05D11F1_002.ab1    24 
   65  C USDA003R_C01_BG607230As01P004D05D11R1_002.ab1   623 
   69    USDA003F_C01_BG607230As01P004D05D11F1_002.ab1    36 
  129  C USDA003R_C01_BG607230As01P004D05D11R1_002.ab1   559 
  133    USDA003F_C01_BG607230As01P004D05D11F1_002.ab1   100 
  181  C USDA003R_C01_BG607230As01P004D05D11R1_002.ab1   507 
  189    USDA003F_C01_BG607230As01P004D05D11F1_002.ab1   156 
  213  C USDA003R_C01_BG607230As01P004D05D11R1_002.ab1   475 
  225    USDA003F_C01_BG607230As01P004D05D11F1_002.ab1   192 
  241  C USDA003R_C01_BG607230As01P004D05D11R1_002.ab1   447 
  253    USDA003F_C01_BG607230As01P004D05D11F1_002.ab1   220 
  261  C USDA003R_C01_BG607230As01P004D05D11R1_002.ab1   427 
  269    USDA003F_C01_BG607230As01P004D05D11F1_002.ab1   236 
  285  C USDA003R_C01_BG607230As01P004D05D11R1_002.ab1   403 
  289    USDA003F_C01_BG607230As01P004D05D11F1_002.ab1   256 
  345  C USDA003R_C01_BG607230As01P004D05D11R1_002.ab1   343 
  357    USDA003F_C01_BG607230As01P004D05D11F1_002.ab1   324 
  381  C USDA003R_C01_BG607230As01P004D05D11R1_002.ab1   307 
  393    USDA003F_C01_BG607230As01P004D05D11F1_002.ab1   360 
  425  C USDA003R_C01_BG607230As01P004D05D11R1_002.ab1   263 
  429    USDA003F_C01_BG607230As01P004D05D11F1_002.ab1   396 
  437  C USDA003R_C01_BG607230As01P004D05D11R1_002.ab1   251 
  509    USDA003F_C01_BG607230As01P004D05D11F1_002.ab1   476 
  513  C USDA003R_C01_BG607230As01P004D05D11R1_002.ab1   175 
  565    USDA003F_C01_BG607230As01P004D05D11F1_002.ab1   532 
  569  C USDA003R_C01_BG607230As01P004D05D11R1_002.ab1   119 
  677    USDA003F_C01_BG607230As01P004D05D11F1_002.ab1   644 
Contig length: old 719, new 719

Contig length: old 719, new 719
New start: 0