No. words: 1151; after pruning: 1125


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:548)  538  0.00 0.00 0.00  USDA003F_F01_BG607230At02P004D05D11F1_011.ab1        1   549 (27)  C USDA003R_F01_BG607230At02P004D05D11R1_011.ab1   (26)   549     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1  C USDA003R_F01_BG607230At02P004D05D11R1_011.ab1   575 
   46    USDA003F_F01_BG607230At02P004D05D11F1_011.ab1    20 
   54  C USDA003R_F01_BG607230At02P004D05D11R1_011.ab1   522 
   70    USDA003F_F01_BG607230At02P004D05D11F1_011.ab1    44 
  114  C USDA003R_F01_BG607230At02P004D05D11R1_011.ab1   462 
  130    USDA003F_F01_BG607230At02P004D05D11F1_011.ab1   104 
  238  C USDA003R_F01_BG607230At02P004D05D11R1_011.ab1   338 
  254    USDA003F_F01_BG607230At02P004D05D11F1_011.ab1   228 
  298  C USDA003R_F01_BG607230At02P004D05D11R1_011.ab1   278 
  302    USDA003F_F01_BG607230At02P004D05D11F1_011.ab1   276 
  346  C USDA003R_F01_BG607230At02P004D05D11R1_011.ab1   230 
  358    USDA003F_F01_BG607230At02P004D05D11F1_011.ab1   332 
  374  C USDA003R_F01_BG607230At02P004D05D11R1_011.ab1   202 
  382    USDA003F_F01_BG607230At02P004D05D11F1_011.ab1   356 
  394  C USDA003R_F01_BG607230At02P004D05D11R1_011.ab1   182 
  410    USDA003F_F01_BG607230At02P004D05D11F1_011.ab1   384 
  434  C USDA003R_F01_BG607230At02P004D05D11R1_011.ab1   142 
  442    USDA003F_F01_BG607230At02P004D05D11F1_011.ab1   416 
  454  C USDA003R_F01_BG607230At02P004D05D11R1_011.ab1   122 
  458    USDA003F_F01_BG607230At02P004D05D11F1_011.ab1   432 
  462  C USDA003R_F01_BG607230At02P004D05D11R1_011.ab1   114 
  474    USDA003F_F01_BG607230At02P004D05D11F1_011.ab1   448 
  486  C USDA003R_F01_BG607230At02P004D05D11R1_011.ab1    90 
  490    USDA003F_F01_BG607230At02P004D05D11F1_011.ab1   464 
  498  C USDA003R_F01_BG607230At02P004D05D11R1_011.ab1    78 
  506    USDA003F_F01_BG607230At02P004D05D11F1_011.ab1   480 
  510  C USDA003R_F01_BG607230At02P004D05D11R1_011.ab1    66 
  522    USDA003F_F01_BG607230At02P004D05D11F1_011.ab1   496 
  534  C USDA003R_F01_BG607230At02P004D05D11R1_011.ab1    42 
  558    USDA003F_F01_BG607230At02P004D05D11F1_011.ab1   532 
  562  C USDA003R_F01_BG607230At02P004D05D11R1_011.ab1    14 
  570    USDA003F_F01_BG607230At02P004D05D11F1_011.ab1   544 
Contig length: old 602, new 602

Contig length: old 602, new 602
New start: 0