No. words: 1607; after pruning: 1581


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:681)  660  0.00 0.00 0.15  USDA003F_H01_BG607230Ld02P004D05D11F1_012.ab1        1   682 (137)  C USDA003R_H01_BG607230Ld02P004D05D11R1_012.ab1   (107)   681     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C USDA003R_H01_BG607230Ld02P004D05D11R1_012.ab1   788 
  119    USDA003F_H01_BG607230Ld02P004D05D11F1_012.ab1    12 
  127  C USDA003R_H01_BG607230Ld02P004D05D11R1_012.ab1   662 
  131    USDA003F_H01_BG607230Ld02P004D05D11F1_012.ab1    24 
  143  C USDA003R_H01_BG607230Ld02P004D05D11R1_012.ab1   646 
  147    USDA003F_H01_BG607230Ld02P004D05D11F1_012.ab1    40 
  155  C USDA003R_H01_BG607230Ld02P004D05D11R1_012.ab1   634 
  159    USDA003F_H01_BG607230Ld02P004D05D11F1_012.ab1    52 
  263  C USDA003R_H01_BG607230Ld02P004D05D11R1_012.ab1   526 
  271    USDA003F_H01_BG607230Ld02P004D05D11F1_012.ab1   164 
  303  C USDA003R_H01_BG607230Ld02P004D05D11R1_012.ab1   486 
  307    USDA003F_H01_BG607230Ld02P004D05D11F1_012.ab1   200 
  315  C USDA003R_H01_BG607230Ld02P004D05D11R1_012.ab1   474 
  323    USDA003F_H01_BG607230Ld02P004D05D11F1_012.ab1   216 
  327  C USDA003R_H01_BG607230Ld02P004D05D11R1_012.ab1   462 
  339    USDA003F_H01_BG607230Ld02P004D05D11F1_012.ab1   232 
  443  C USDA003R_H01_BG607230Ld02P004D05D11R1_012.ab1   346 
  483    USDA003F_H01_BG607230Ld02P004D05D11F1_012.ab1   376 
  531  C USDA003R_H01_BG607230Ld02P004D05D11R1_012.ab1   258 
  543    USDA003F_H01_BG607230Ld02P004D05D11F1_012.ab1   436 
  627  C USDA003R_H01_BG607230Ld02P004D05D11R1_012.ab1   162 
  631    USDA003F_H01_BG607230Ld02P004D05D11F1_012.ab1   524 
  695  C USDA003R_H01_BG607230Ld02P004D05D11R1_012.ab1    94 
  699    USDA003F_H01_BG607230Ld02P004D05D11F1_012.ab1   592 
  707  C USDA003R_H01_BG607230Ld02P004D05D11R1_012.ab1    82 
  711    USDA003F_H01_BG607230Ld02P004D05D11F1_012.ab1   604 
  743  C USDA003R_H01_BG607230Ld02P004D05D11R1_012.ab1    46 
  771    USDA003F_H01_BG607230Ld02P004D05D11F1_012.ab1   664 
Contig length: old 925, new 926

Contig length: old 926, new 926
New start: 0