No. words: 1638; after pruning: 1612


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.9 (1,1:765)  736  0.13 0.00 0.26  USDA003F_C02_BG607230Ld05P004D05D11F1_006.ab1        1   767 (63)  C USDA003R_C02_BG607230Ld05P004D05D11R1_006.ab1   (43)   765     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  378 nodes

 191 str. conn. components

Path
    1  C USDA003R_C02_BG607230Ld05P004D05D11R1_006.ab1   808 
   47    USDA003F_C02_BG607230Ld05P004D05D11F1_006.ab1     4 
   79  C USDA003R_C02_BG607230Ld05P004D05D11R1_006.ab1   730 
   83    USDA003F_C02_BG607230Ld05P004D05D11F1_006.ab1    40 
  331  C USDA003R_C02_BG607230Ld05P004D05D11R1_006.ab1   478 
  355    USDA003F_C02_BG607230Ld05P004D05D11F1_006.ab1   312 
  367  C USDA003R_C02_BG607230Ld05P004D05D11R1_006.ab1   442 
  455    USDA003F_C02_BG607230Ld05P004D05D11F1_006.ab1   412 
  463  C USDA003R_C02_BG607230Ld05P004D05D11R1_006.ab1   346 
  503    USDA003F_C02_BG607230Ld05P004D05D11F1_006.ab1   460 
  523  C USDA003R_C02_BG607230Ld05P004D05D11R1_006.ab1   286 
  599    USDA003F_C02_BG607230Ld05P004D05D11F1_006.ab1   556 
  603  C USDA003R_C02_BG607230Ld05P004D05D11R1_006.ab1   206 
  690    USDA003F_C02_BG607230Ld05P004D05D11F1_006.ab1   648 
  694  C USDA003R_C02_BG607230Ld05P004D05D11R1_006.ab1   115 
  794    USDA003F_C02_BG607230Ld05P004D05D11F1_006.ab1   752 
Contig length: old 872, new 872

Contig length: old 872, new 872
New start: 0