No. words: 1579; after pruning: 1553


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.9 (1,1:668)  652  0.00 0.00 0.00  USDA003F_D02_BG607230Ld06P004D05D11F1_014.ab1        1   669 (136)  C USDA003R_D02_BG607230Ld06P004D05D11R1_014.ab1   (105)   669     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  336 nodes

 170 str. conn. components

Path
    1  C USDA003R_D02_BG607230Ld06P004D05D11R1_014.ab1   774 
  109    USDA003F_D02_BG607230Ld06P004D05D11F1_014.ab1     4 
  113  C USDA003R_D02_BG607230Ld06P004D05D11R1_014.ab1   662 
  121    USDA003F_D02_BG607230Ld06P004D05D11F1_014.ab1    16 
  141  C USDA003R_D02_BG607230Ld06P004D05D11R1_014.ab1   634 
  145    USDA003F_D02_BG607230Ld06P004D05D11F1_014.ab1    40 
  201  C USDA003R_D02_BG607230Ld06P004D05D11R1_014.ab1   574 
  205    USDA003F_D02_BG607230Ld06P004D05D11F1_014.ab1   100 
  313  C USDA003R_D02_BG607230Ld06P004D05D11R1_014.ab1   462 
  333    USDA003F_D02_BG607230Ld06P004D05D11F1_014.ab1   228 
  485  C USDA003R_D02_BG607230Ld06P004D05D11R1_014.ab1   290 
  489    USDA003F_D02_BG607230Ld06P004D05D11F1_014.ab1   384 
  517  C USDA003R_D02_BG607230Ld06P004D05D11R1_014.ab1   258 
  657    USDA003F_D02_BG607230Ld06P004D05D11F1_014.ab1   552 
  661  C USDA003R_D02_BG607230Ld06P004D05D11R1_014.ab1   114 
  769    USDA003F_D02_BG607230Ld06P004D05D11F1_014.ab1   664 
Contig length: old 910, new 910

Contig length: old 910, new 910
New start: 0