No. words: 1605; after pruning: 1579


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.9 (1,1:668)  652  0.00 0.00 0.00  USDA003F_E02_BG607230Ld07P004D05D11F1_007.ab1        1   669 (153)  C USDA003R_E02_BG607230Ld07P004D05D11R1_007.ab1   (114)   669     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  336 nodes

 170 str. conn. components

Path
    1  C USDA003R_E02_BG607230Ld07P004D05D11R1_007.ab1   783 
  118    USDA003F_E02_BG607230Ld07P004D05D11F1_007.ab1     4 
  122  C USDA003R_E02_BG607230Ld07P004D05D11R1_007.ab1   662 
  126    USDA003F_E02_BG607230Ld07P004D05D11F1_007.ab1    12 
  150  C USDA003R_E02_BG607230Ld07P004D05D11R1_007.ab1   634 
  154    USDA003F_E02_BG607230Ld07P004D05D11F1_007.ab1    40 
  210  C USDA003R_E02_BG607230Ld07P004D05D11R1_007.ab1   574 
  214    USDA003F_E02_BG607230Ld07P004D05D11F1_007.ab1   100 
  270  C USDA003R_E02_BG607230Ld07P004D05D11R1_007.ab1   514 
  274    USDA003F_E02_BG607230Ld07P004D05D11F1_007.ab1   160 
  310  C USDA003R_E02_BG607230Ld07P004D05D11R1_007.ab1   474 
  322    USDA003F_E02_BG607230Ld07P004D05D11F1_007.ab1   208 
  326  C USDA003R_E02_BG607230Ld07P004D05D11R1_007.ab1   458 
  334    USDA003F_E02_BG607230Ld07P004D05D11F1_007.ab1   220 
  338  C USDA003R_E02_BG607230Ld07P004D05D11R1_007.ab1   446 
  350    USDA003F_E02_BG607230Ld07P004D05D11F1_007.ab1   236 
  378  C USDA003R_E02_BG607230Ld07P004D05D11R1_007.ab1   406 
  386    USDA003F_E02_BG607230Ld07P004D05D11F1_007.ab1   272 
  390  C USDA003R_E02_BG607230Ld07P004D05D11R1_007.ab1   394 
  398    USDA003F_E02_BG607230Ld07P004D05D11F1_007.ab1   284 
  418  C USDA003R_E02_BG607230Ld07P004D05D11R1_007.ab1   366 
  422    USDA003F_E02_BG607230Ld07P004D05D11F1_007.ab1   308 
  438  C USDA003R_E02_BG607230Ld07P004D05D11R1_007.ab1   346 
  482    USDA003F_E02_BG607230Ld07P004D05D11F1_007.ab1   368 
  610  C USDA003R_E02_BG607230Ld07P004D05D11R1_007.ab1   174 
  630    USDA003F_E02_BG607230Ld07P004D05D11F1_007.ab1   516 
  638  C USDA003R_E02_BG607230Ld07P004D05D11R1_007.ab1   146 
  646    USDA003F_E02_BG607230Ld07P004D05D11F1_007.ab1   532 
  658  C USDA003R_E02_BG607230Ld07P004D05D11R1_007.ab1   126 
  666    USDA003F_E02_BG607230Ld07P004D05D11F1_007.ab1   552 
  678  C USDA003R_E02_BG607230Ld07P004D05D11R1_007.ab1   106 
  682    USDA003F_E02_BG607230Ld07P004D05D11F1_007.ab1   568 
  686  C USDA003R_E02_BG607230Ld07P004D05D11R1_007.ab1    98 
  690    USDA003F_E02_BG607230Ld07P004D05D11F1_007.ab1   576 
  698  C USDA003R_E02_BG607230Ld07P004D05D11R1_007.ab1    86 
  726    USDA003F_E02_BG607230Ld07P004D05D11F1_007.ab1   612 
  746  C USDA003R_E02_BG607230Ld07P004D05D11R1_007.ab1    38 
  778    USDA003F_E02_BG607230Ld07P004D05D11F1_007.ab1   664 
Contig length: old 936, new 936

Contig length: old 936, new 936
New start: 0