No. words: 1620; after pruning: 1594


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:682)  661  0.00 0.15 0.00  USDA003F_F02_BG607230Ld08P004D05D11F1_015.ab1        1   682 (139)  C USDA003R_F02_BG607230Ld08P004D05D11R1_015.ab1   (116)   683     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C USDA003R_F02_BG607230Ld08P004D05D11R1_015.ab1   799 
  120    USDA003F_F02_BG607230Ld08P004D05D11F1_015.ab1     4 
  128  C USDA003R_F02_BG607230Ld08P004D05D11R1_015.ab1   672 
  132    USDA003F_F02_BG607230Ld08P004D05D11F1_015.ab1    16 
  152  C USDA003R_F02_BG607230Ld08P004D05D11R1_015.ab1   648 
  156    USDA003F_F02_BG607230Ld08P004D05D11F1_015.ab1    40 
  324  C USDA003R_F02_BG607230Ld08P004D05D11R1_015.ab1   476 
  332    USDA003F_F02_BG607230Ld08P004D05D11F1_015.ab1   216 
  340  C USDA003R_F02_BG607230Ld08P004D05D11R1_015.ab1   460 
  348    USDA003F_F02_BG607230Ld08P004D05D11F1_015.ab1   232 
  380  C USDA003R_F02_BG607230Ld08P004D05D11R1_015.ab1   420 
  388    USDA003F_F02_BG607230Ld08P004D05D11F1_015.ab1   272 
  392  C USDA003R_F02_BG607230Ld08P004D05D11R1_015.ab1   408 
  396    USDA003F_F02_BG607230Ld08P004D05D11F1_015.ab1   280 
  440  C USDA003R_F02_BG607230Ld08P004D05D11R1_015.ab1   360 
  464    USDA003F_F02_BG607230Ld08P004D05D11F1_015.ab1   348 
  580  C USDA003R_F02_BG607230Ld08P004D05D11R1_015.ab1   220 
  600    USDA003F_F02_BG607230Ld08P004D05D11F1_015.ab1   484 
  612  C USDA003R_F02_BG607230Ld08P004D05D11R1_015.ab1   188 
  620    USDA003F_F02_BG607230Ld08P004D05D11F1_015.ab1   504 
  628  C USDA003R_F02_BG607230Ld08P004D05D11R1_015.ab1   172 
  640    USDA003F_F02_BG607230Ld08P004D05D11F1_015.ab1   524 
  644  C USDA003R_F02_BG607230Ld08P004D05D11R1_015.ab1   156 
  656    USDA003F_F02_BG607230Ld08P004D05D11F1_015.ab1   540 
  660  C USDA003R_F02_BG607230Ld08P004D05D11R1_015.ab1   140 
  668    USDA003F_F02_BG607230Ld08P004D05D11F1_015.ab1   552 
  672  C USDA003R_F02_BG607230Ld08P004D05D11R1_015.ab1   128 
  696    USDA003F_F02_BG607230Ld08P004D05D11F1_015.ab1   580 
  700  C USDA003R_F02_BG607230Ld08P004D05D11R1_015.ab1   100 
  704    USDA003F_F02_BG607230Ld08P004D05D11F1_015.ab1   588 
  708  C USDA003R_F02_BG607230Ld08P004D05D11R1_015.ab1    92 
  736    USDA003F_F02_BG607230Ld08P004D05D11F1_015.ab1   620 
  744  C USDA003R_F02_BG607230Ld08P004D05D11R1_015.ab1    56 
  760    USDA003F_F02_BG607230Ld08P004D05D11F1_015.ab1   644 
  764  C USDA003R_F02_BG607230Ld08P004D05D11R1_015.ab1    36 
  768    USDA003F_F02_BG607230Ld08P004D05D11F1_015.ab1   652 
  780  C USDA003R_F02_BG607230Ld08P004D05D11R1_015.ab1    19 
  784    USDA003F_F02_BG607230Ld08P004D05D11F1_015.ab1   668 
Contig length: old 937, new 937

Contig length: old 937, new 937
New start: 0