No. words: 1636; after pruning: 1610


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.5 (1,1:759)  734  0.13 0.00 0.13  USDA003F_G02_BG607230Ld09P004D05D11F1_008.ab1        1   760 (63)  C USDA003R_G02_BG607230Ld09P004D05D11R1_008.ab1   (54)   759     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  376 nodes

 190 str. conn. components

Path
    1  C USDA003R_G02_BG607230Ld09P004D05D11R1_008.ab1   813 
   58    USDA003F_G02_BG607230Ld09P004D05D11F1_008.ab1     4 
  330  C USDA003R_G02_BG607230Ld09P004D05D11R1_008.ab1   485 
  334    USDA003F_G02_BG607230Ld09P004D05D11F1_008.ab1   280 
  478  C USDA003R_G02_BG607230Ld09P004D05D11R1_008.ab1   337 
  518    USDA003F_G02_BG607230Ld09P004D05D11F1_008.ab1   464 
  558  C USDA003R_G02_BG607230Ld09P004D05D11R1_008.ab1   257 
  562    USDA003F_G02_BG607230Ld09P004D05D11F1_008.ab1   508 
  594  C USDA003R_G02_BG607230Ld09P004D05D11R1_008.ab1   221 
  606    USDA003F_G02_BG607230Ld09P004D05D11F1_008.ab1   552 
  626  C USDA003R_G02_BG607230Ld09P004D05D11R1_008.ab1   189 
  808    USDA003F_G02_BG607230Ld09P004D05D11F1_008.ab1   754 
Contig length: old 876, new 877

Contig length: old 877, new 877
New start: 0