No. words: 1617; after pruning: 1591


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:684)  652  0.15 0.44 0.00  USDA003F_H02_BG607230Ld10P004D05D11F1_016.ab1        1   684 (153)  C USDA003R_H02_BG607230Ld10P004D05D11R1_016.ab1   (93)   687     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  336 nodes

 170 str. conn. components

Path
    1  C USDA003R_H02_BG607230Ld10P004D05D11R1_016.ab1   780 
  114    USDA003F_H02_BG607230Ld10P004D05D11F1_016.ab1    18 
  130  C USDA003R_H02_BG607230Ld10P004D05D11R1_016.ab1   651 
  138    USDA003F_H02_BG607230Ld10P004D05D11F1_016.ab1    42 
  414  C USDA003R_H02_BG607230Ld10P004D05D11R1_016.ab1   367 
  418    USDA003F_H02_BG607230Ld10P004D05D11F1_016.ab1   322 
  514  C USDA003R_H02_BG607230Ld10P004D05D11R1_016.ab1   267 
  522    USDA003F_H02_BG607230Ld10P004D05D11F1_016.ab1   426 
  526  C USDA003R_H02_BG607230Ld10P004D05D11R1_016.ab1   255 
  546    USDA003F_H02_BG607230Ld10P004D05D11F1_016.ab1   450 
  550  C USDA003R_H02_BG607230Ld10P004D05D11R1_016.ab1   231 
  602    USDA003F_H02_BG607230Ld10P004D05D11F1_016.ab1   506 
  606  C USDA003R_H02_BG607230Ld10P004D05D11R1_016.ab1   175 
  650    USDA003F_H02_BG607230Ld10P004D05D11F1_016.ab1   554 
  654  C USDA003R_H02_BG607230Ld10P004D05D11R1_016.ab1   127 
  726    USDA003F_H02_BG607230Ld10P004D05D11F1_016.ab1   630 
  742  C USDA003R_H02_BG607230Ld10P004D05D11R1_016.ab1    39 
  758    USDA003F_H02_BG607230Ld10P004D05D11F1_016.ab1   662 
Contig length: old 932, new 933

Contig length: old 933, new 933
New start: 0