No. words: 891; after pruning: 865


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 7.2 (1,1:425)  397  0.00 0.24 0.71  USDA028F_A09_BG607230Sn26P035G08P004D051F1_079.ab1        3   425 (7)  C USDA028R_A09_BG607230Sn26P035G08P004D051R1_079.ab1   (36)   423     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  196 nodes

 100 str. conn. components

Path
    1  C USDA028R_A09_BG607230Sn26P035G08P004D051R1_079.ab1   459 
  128    USDA028F_A09_BG607230Sn26P035G08P004D051F1_079.ab1    94 
  140  C USDA028R_A09_BG607230Sn26P035G08P004D051R1_079.ab1   320 
  164    USDA028F_A09_BG607230Sn26P035G08P004D051F1_079.ab1   130 
  172  C USDA028R_A09_BG607230Sn26P035G08P004D051R1_079.ab1   288 
  180    USDA028F_A09_BG607230Sn26P035G08P004D051F1_079.ab1   146 
  184  C USDA028R_A09_BG607230Sn26P035G08P004D051R1_079.ab1   276 
  232    USDA028F_A09_BG607230Sn26P035G08P004D051F1_079.ab1   198 
  280  C USDA028R_A09_BG607230Sn26P035G08P004D051R1_079.ab1   180 
  340    USDA028F_A09_BG607230Sn26P035G08P004D051F1_079.ab1   306 
  384  C USDA028R_A09_BG607230Sn26P035G08P004D051R1_079.ab1    76 
  392    USDA028F_A09_BG607230Sn26P035G08P004D051F1_079.ab1   358 
Contig length: old 465, new 466

Contig length: old 466, new 466
New start: 0