No. words: 890; after pruning: 864


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 7.5 (1,1:425)  406  0.00 0.00 0.47  USDA028F_A07_BG607230Ta11P035G08P004D051F1_063.ab1        3   425 (7)  C USDA028R_A07_BG607230Ta11P035G08P004D051R1_063.ab1   (35)   423     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  202 nodes

 103 str. conn. components

Path
    1  C USDA028R_A07_BG607230Ta11P035G08P004D051R1_063.ab1   458 
   83    USDA028F_A07_BG607230Ta11P035G08P004D051F1_063.ab1    50 
   87  C USDA028R_A07_BG607230Ta11P035G08P004D051R1_063.ab1   372 
  115    USDA028F_A07_BG607230Ta11P035G08P004D051F1_063.ab1    82 
  119  C USDA028R_A07_BG607230Ta11P035G08P004D051R1_063.ab1   340 
  123    USDA028F_A07_BG607230Ta11P035G08P004D051F1_063.ab1    90 
  131  C USDA028R_A07_BG607230Ta11P035G08P004D051R1_063.ab1   328 
  135    USDA028F_A07_BG607230Ta11P035G08P004D051F1_063.ab1   102 
  143  C USDA028R_A07_BG607230Ta11P035G08P004D051R1_063.ab1   316 
  163    USDA028F_A07_BG607230Ta11P035G08P004D051F1_063.ab1   130 
  171  C USDA028R_A07_BG607230Ta11P035G08P004D051R1_063.ab1   288 
  175    USDA028F_A07_BG607230Ta11P035G08P004D051F1_063.ab1   142 
  183  C USDA028R_A07_BG607230Ta11P035G08P004D051R1_063.ab1   276 
  227    USDA028F_A07_BG607230Ta11P035G08P004D051F1_063.ab1   194 
  239  C USDA028R_A07_BG607230Ta11P035G08P004D051R1_063.ab1   220 
  243    USDA028F_A07_BG607230Ta11P035G08P004D051F1_063.ab1   210 
  275  C USDA028R_A07_BG607230Ta11P035G08P004D051R1_063.ab1   184 
  299    USDA028F_A07_BG607230Ta11P035G08P004D051F1_063.ab1   266 
  307  C USDA028R_A07_BG607230Ta11P035G08P004D051R1_063.ab1   152 
  311    USDA028F_A07_BG607230Ta11P035G08P004D051F1_063.ab1   278 
  315  C USDA028R_A07_BG607230Ta11P035G08P004D051R1_063.ab1   144 
  335    USDA028F_A07_BG607230Ta11P035G08P004D051F1_063.ab1   302 
  347  C USDA028R_A07_BG607230Ta11P035G08P004D051R1_063.ab1   112 
  355    USDA028F_A07_BG607230Ta11P035G08P004D051F1_063.ab1   322 
  375  C USDA028R_A07_BG607230Ta11P035G08P004D051R1_063.ab1    84 
  391    USDA028F_A07_BG607230Ta11P035G08P004D051F1_063.ab1   358 
Contig length: old 464, new 465

Contig length: old 465, new 465
New start: 0