No. words: 884; after pruning: 858


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.1 (1,1:419)  399  0.00 0.24 0.48  USDA028F_E07_BG607230Ta15P035G08P004D051F1_055.ab1        1   419 (7)  C USDA028R_E07_BG607230Ta15P035G08P004D051R1_055.ab1   (38)   420     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  198 nodes

 101 str. conn. components

Path
    1  C USDA028R_E07_BG607230Ta15P035G08P004D051R1_055.ab1   458 
   83    USDA028F_E07_BG607230Ta15P035G08P004D051F1_055.ab1    44 
   87  C USDA028R_E07_BG607230Ta15P035G08P004D051R1_055.ab1   372 
   95    USDA028F_E07_BG607230Ta15P035G08P004D051F1_055.ab1    56 
  107  C USDA028R_E07_BG607230Ta15P035G08P004D051R1_055.ab1   352 
  115    USDA028F_E07_BG607230Ta15P035G08P004D051F1_055.ab1    76 
  119  C USDA028R_E07_BG607230Ta15P035G08P004D051R1_055.ab1   340 
  175    USDA028F_E07_BG607230Ta15P035G08P004D051F1_055.ab1   136 
  183  C USDA028R_E07_BG607230Ta15P035G08P004D051R1_055.ab1   276 
  223    USDA028F_E07_BG607230Ta15P035G08P004D051F1_055.ab1   184 
  239  C USDA028R_E07_BG607230Ta15P035G08P004D051R1_055.ab1   220 
  251    USDA028F_E07_BG607230Ta15P035G08P004D051F1_055.ab1   212 
  283  C USDA028R_E07_BG607230Ta15P035G08P004D051R1_055.ab1   176 
  303    USDA028F_E07_BG607230Ta15P035G08P004D051F1_055.ab1   264 
  307  C USDA028R_E07_BG607230Ta15P035G08P004D051R1_055.ab1   152 
  331    USDA028F_E07_BG607230Ta15P035G08P004D051F1_055.ab1   292 
  347  C USDA028R_E07_BG607230Ta15P035G08P004D051R1_055.ab1   112 
  355    USDA028F_E07_BG607230Ta15P035G08P004D051F1_055.ab1   316 
  383  C USDA028R_E07_BG607230Ta15P035G08P004D051R1_055.ab1    76 
  387    USDA028F_E07_BG607230Ta15P035G08P004D051F1_055.ab1   348 
Contig length: old 464, new 465

Contig length: old 465, new 465
New start: 0