No. words: 892; after pruning: 866


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 8.0 (1,1:427)  407  0.00 0.00 0.47  USDA028F_A08_BG607230Ta19P035G08P004D051F1_064.ab1        3   426 (7)  C USDA028R_A08_BG607230Ta19P035G08P004D051R1_064.ab1   (35)   424     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  206 nodes

 105 str. conn. components

Path
    1  C USDA028R_A08_BG607230Ta19P035G08P004D051R1_064.ab1   459 
  112    USDA028F_A08_BG607230Ta19P035G08P004D051F1_064.ab1    80 
  120  C USDA028R_A08_BG607230Ta19P035G08P004D051R1_064.ab1   340 
  164    USDA028F_A08_BG607230Ta19P035G08P004D051F1_064.ab1   132 
  184  C USDA028R_A08_BG607230Ta19P035G08P004D051R1_064.ab1   276 
  228    USDA028F_A08_BG607230Ta19P035G08P004D051F1_064.ab1   196 
  240  C USDA028R_A08_BG607230Ta19P035G08P004D051R1_064.ab1   220 
  248    USDA028F_A08_BG607230Ta19P035G08P004D051F1_064.ab1   216 
  288  C USDA028R_A08_BG607230Ta19P035G08P004D051R1_064.ab1   172 
  296    USDA028F_A08_BG607230Ta19P035G08P004D051F1_064.ab1   264 
  320  C USDA028R_A08_BG607230Ta19P035G08P004D051R1_064.ab1   140 
  336    USDA028F_A08_BG607230Ta19P035G08P004D051F1_064.ab1   304 
Contig length: old 464, new 465

Contig length: old 465, new 465
New start: 0