No. words: 1365; after pruning: 1339


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.6 (1,1:656)  639  0.00 0.00 0.00  USDA003F_B01_BG607230Tu02P004D05D11F1_009.ab1        1   657 (25)  C USDA003R_B01_BG607230Tu02P004D05D11R1_009.ab1   (26)   657     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  330 nodes

 167 str. conn. components

Path
    1  C USDA003R_B01_BG607230Tu02P004D05D11R1_009.ab1   683 
   34    USDA003F_B01_BG607230Tu02P004D05D11F1_009.ab1     8 
   46  C USDA003R_B01_BG607230Tu02P004D05D11R1_009.ab1   638 
   50    USDA003F_B01_BG607230Tu02P004D05D11F1_009.ab1    24 
  222  C USDA003R_B01_BG607230Tu02P004D05D11R1_009.ab1   462 
  230    USDA003F_B01_BG607230Tu02P004D05D11F1_009.ab1   204 
  234  C USDA003R_B01_BG607230Tu02P004D05D11R1_009.ab1   450 
  238    USDA003F_B01_BG607230Tu02P004D05D11F1_009.ab1   212 
  338  C USDA003R_B01_BG607230Tu02P004D05D11R1_009.ab1   346 
  354    USDA003F_B01_BG607230Tu02P004D05D11F1_009.ab1   328 
  430  C USDA003R_B01_BG607230Tu02P004D05D11R1_009.ab1   254 
  442    USDA003F_B01_BG607230Tu02P004D05D11F1_009.ab1   416 
  474  C USDA003R_B01_BG607230Tu02P004D05D11R1_009.ab1   210 
  506    USDA003F_B01_BG607230Tu02P004D05D11F1_009.ab1   480 
  510  C USDA003R_B01_BG607230Tu02P004D05D11R1_009.ab1   174 
  530    USDA003F_B01_BG607230Tu02P004D05D11F1_009.ab1   504 
  538  C USDA003R_B01_BG607230Tu02P004D05D11R1_009.ab1   146 
  566    USDA003F_B01_BG607230Tu02P004D05D11F1_009.ab1   540 
  578  C USDA003R_B01_BG607230Tu02P004D05D11R1_009.ab1   106 
  582    USDA003F_B01_BG607230Tu02P004D05D11F1_009.ab1   556 
  598  C USDA003R_B01_BG607230Tu02P004D05D11R1_009.ab1    86 
  634    USDA003F_B01_BG607230Tu02P004D05D11F1_009.ab1   608 
  638  C USDA003R_B01_BG607230Tu02P004D05D11R1_009.ab1    46 
  658    USDA003F_B01_BG607230Tu02P004D05D11F1_009.ab1   632 
  662  C USDA003R_B01_BG607230Tu02P004D05D11R1_009.ab1    22 
  678    USDA003F_B01_BG607230Tu02P004D05D11F1_009.ab1   652 
Contig length: old 708, new 708

Contig length: old 708, new 708
New start: 0