No. words: 1667; after pruning: 1641


Histogram of relative pair offsets, for read pairs with multiple alignments:
55     4
99     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.5 (1,1:1057)  590  0.00 0.00 0.00  USDA011F_E07_BG607523At01P017H06P017H12F1_055.ab1      211   819 (0)  C USDA011R_E07_BG607523At01P017H06P017H12R1_055.ab1   (0)   848   240 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1    USDA011F_E07_BG607523At01P017H06P017H12F1_055.ab1     1 
  275  C USDA011R_E07_BG607523At01P017H06P017H12R1_055.ab1   784 
  279    USDA011F_E07_BG607523At01P017H06P017H12F1_055.ab1   279 
  343  C USDA011R_E07_BG607523At01P017H06P017H12R1_055.ab1   716 
  359    USDA011F_E07_BG607523At01P017H06P017H12F1_055.ab1   359 
  407  C USDA011R_E07_BG607523At01P017H06P017H12R1_055.ab1   652 
  411    USDA011F_E07_BG607523At01P017H06P017H12F1_055.ab1   411 
  431  C USDA011R_E07_BG607523At01P017H06P017H12R1_055.ab1   628 
  435    USDA011F_E07_BG607523At01P017H06P017H12F1_055.ab1   435 
  439  C USDA011R_E07_BG607523At01P017H06P017H12R1_055.ab1   620 
  451    USDA011F_E07_BG607523At01P017H06P017H12F1_055.ab1   451 
  463  C USDA011R_E07_BG607523At01P017H06P017H12R1_055.ab1   596 
  471    USDA011F_E07_BG607523At01P017H06P017H12F1_055.ab1   471 
  487  C USDA011R_E07_BG607523At01P017H06P017H12R1_055.ab1   572 
Contig length: old 1058, new 1058

Contig length: old 1058, new 1058
New start: 0