No. words: 1608; after pruning: 1582


Histogram of relative pair offsets, for read pairs with multiple alignments:
55     4
99     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.2 (1,1:999)  584  0.33 0.00 0.00  USDA011F_F07_BG607523At02P017H06P017H12F1_053.ab1      239   846 (0)  C USDA011R_F07_BG607523At02P017H06P017H12R1_053.ab1   (0)   762   155 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  298 nodes

 151 str. conn. components

Path
    1    USDA011F_F07_BG607523At02P017H06P017H12F1_053.ab1     1 
  322  C USDA011R_F07_BG607523At02P017H06P017H12R1_053.ab1   679 
  326    USDA011F_F07_BG607523At02P017H06P017H12F1_053.ab1   326 
  330  C USDA011R_F07_BG607523At02P017H06P017H12R1_053.ab1   671 
  342    USDA011F_F07_BG607523At02P017H06P017H12F1_053.ab1   342 
  386  C USDA011R_F07_BG607523At02P017H06P017H12R1_053.ab1   615 
  390    USDA011F_F07_BG607523At02P017H06P017H12F1_053.ab1   390 
  406  C USDA011R_F07_BG607523At02P017H06P017H12R1_053.ab1   595 
Contig length: old 1000, new 1000

Contig length: old 1000, new 1000
New start: 0