No. words: 1320; after pruning: 1294


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.4 (1,1:987)  313  0.90 0.00 0.00  USDA011F_G07_BG607523Ld01P017H06P017H12F1_051.ab1      355   686 (0)  C USDA011R_G07_BG607523Ld01P017H06P017H12R1_051.ab1   (0)   634   303 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  160 nodes

 82 str. conn. components

Path
    1    USDA011F_G07_BG607523Ld01P017H06P017H12F1_051.ab1     1 
  442  C USDA011R_G07_BG607523Ld01P017H06P017H12R1_051.ab1   547 
  446    USDA011F_G07_BG607523Ld01P017H06P017H12F1_051.ab1   446 
  454  C USDA011R_G07_BG607523Ld01P017H06P017H12R1_051.ab1   535 
  458    USDA011F_G07_BG607523Ld01P017H06P017H12F1_051.ab1   458 
  471  C USDA011R_G07_BG607523Ld01P017H06P017H12R1_051.ab1   518 
  475    USDA011F_G07_BG607523Ld01P017H06P017H12F1_051.ab1   475 
  483  C USDA011R_G07_BG607523Ld01P017H06P017H12R1_051.ab1   506 
Contig length: old 988, new 988

Contig length: old 988, new 988
New start: 0