No. words: 1542; after pruning: 1516


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:1093)  438  0.00 0.00 0.00  USDA011F_A08_BG607523Ld03P017H06P017H12F1_064.ab1      317   764 (0)  C USDA011R_A08_BG607523Ld03P017H06P017H12R1_064.ab1   (0)   778   331 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1    USDA011F_A08_BG607523Ld03P017H06P017H12F1_064.ab1     1 
  396  C USDA011R_A08_BG607523Ld03P017H06P017H12R1_064.ab1   699 
  400    USDA011F_A08_BG607523Ld03P017H06P017H12F1_064.ab1   400 
  404  C USDA011R_A08_BG607523Ld03P017H06P017H12R1_064.ab1   691 
  408    USDA011F_A08_BG607523Ld03P017H06P017H12F1_064.ab1   408 
  460  C USDA011R_A08_BG607523Ld03P017H06P017H12R1_064.ab1   635 
  472    USDA011F_A08_BG607523Ld03P017H06P017H12F1_064.ab1   472 
  476  C USDA011R_A08_BG607523Ld03P017H06P017H12R1_064.ab1   619 
Contig length: old 1094, new 1094

Contig length: old 1094, new 1094
New start: 0