No. words: 1633; after pruning: 1593


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:1089)  520  0.18 0.18 0.00  USDA011F_B08_BG607523Ld04P017H06P017H12F1_062.ab1      268   809 (0)  C USDA011R_B08_BG607523Ld04P017H06P017H12R1_062.ab1   (0)   824   282 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1    USDA011F_B08_BG607523Ld04P017H06P017H12F1_062.ab1     1 
  343  C USDA011R_B08_BG607523Ld04P017H06P017H12R1_062.ab1   749 
  347    USDA011F_B08_BG607523Ld04P017H06P017H12F1_062.ab1   347 
  387  C USDA011R_B08_BG607523Ld04P017H06P017H12R1_062.ab1   705 
  391    USDA011F_B08_BG607523Ld04P017H06P017H12F1_062.ab1   391 
  395  C USDA011R_B08_BG607523Ld04P017H06P017H12R1_062.ab1   697 
  399    USDA011F_B08_BG607523Ld04P017H06P017H12F1_062.ab1   399 
  403  C USDA011R_B08_BG607523Ld04P017H06P017H12R1_062.ab1   689 
  407    USDA011F_B08_BG607523Ld04P017H06P017H12F1_062.ab1   407 
  467  C USDA011R_B08_BG607523Ld04P017H06P017H12R1_062.ab1   625 
Contig length: old 1090, new 1091

Contig length: old 1091, new 1091
New start: 0