No. words: 1716; after pruning: 1690


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.0 (1,1:1081)  610  0.16 0.00 0.00  USDA011F_C08_BG607523Ld05P017H06P017H12F1_060.ab1      200   833 (0)  C USDA011R_C08_BG607523Ld05P017H06P017H12R1_060.ab1   (0)   883   250 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1    USDA011F_C08_BG607523Ld05P017H06P017H12F1_060.ab1     1 
  319  C USDA011R_C08_BG607523Ld05P017H06P017H12R1_060.ab1   764 
  323    USDA011F_C08_BG607523Ld05P017H06P017H12F1_060.ab1   323 
  395  C USDA011R_C08_BG607523Ld05P017H06P017H12R1_060.ab1   688 
  399    USDA011F_C08_BG607523Ld05P017H06P017H12F1_060.ab1   399 
  423  C USDA011R_C08_BG607523Ld05P017H06P017H12R1_060.ab1   660 
  427    USDA011F_C08_BG607523Ld05P017H06P017H12F1_060.ab1   427 
  467  C USDA011R_C08_BG607523Ld05P017H06P017H12R1_060.ab1   616 
Contig length: old 1082, new 1082

Contig length: old 1082, new 1082
New start: 0