No. words: 1562; after pruning: 1536


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:1101)  446  0.22 0.00 0.00  USDA011F_D08_BG607523Ld06P017H06P017H12F1_058.ab1      316   775 (0)  C USDA011R_D08_BG607523Ld06P017H06P017H12R1_058.ab1   (0)   787   328 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1    USDA011F_D08_BG607523Ld06P017H06P017H12F1_058.ab1     1 
  395  C USDA011R_D08_BG607523Ld06P017H06P017H12R1_058.ab1   708 
  407    USDA011F_D08_BG607523Ld06P017H06P017H12F1_058.ab1   407 
  411  C USDA011R_D08_BG607523Ld06P017H06P017H12R1_058.ab1   692 
  415    USDA011F_D08_BG607523Ld06P017H06P017H12F1_058.ab1   415 
  431  C USDA011R_D08_BG607523Ld06P017H06P017H12R1_058.ab1   672 
  443    USDA011F_D08_BG607523Ld06P017H06P017H12F1_058.ab1   443 
  479  C USDA011R_D08_BG607523Ld06P017H06P017H12R1_058.ab1   624 
Contig length: old 1102, new 1102

Contig length: old 1102, new 1102
New start: 0