No. words: 1565; after pruning: 1539


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:1097)  456  0.00 0.00 0.00  USDA011F_E08_BG607523Ld07P017H06P017H12F1_056.ab1      325   791 (0)  C USDA011R_E08_BG607523Ld07P017H06P017H12R1_056.ab1   (0)   774   308 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1    USDA011F_E08_BG607523Ld07P017H06P017H12F1_056.ab1     1 
  352  C USDA011R_E08_BG607523Ld07P017H06P017H12R1_056.ab1   747 
  356    USDA011F_E08_BG607523Ld07P017H06P017H12F1_056.ab1   356 
  360  C USDA011R_E08_BG607523Ld07P017H06P017H12R1_056.ab1   739 
  364    USDA011F_E08_BG607523Ld07P017H06P017H12F1_056.ab1   364 
  392  C USDA011R_E08_BG607523Ld07P017H06P017H12R1_056.ab1   707 
  400    USDA011F_E08_BG607523Ld07P017H06P017H12F1_056.ab1   400 
  404  C USDA011R_E08_BG607523Ld07P017H06P017H12R1_056.ab1   695 
  416    USDA011F_E08_BG607523Ld07P017H06P017H12F1_056.ab1   416 
  424  C USDA011R_E08_BG607523Ld07P017H06P017H12R1_056.ab1   675 
Contig length: old 1098, new 1098

Contig length: old 1098, new 1098
New start: 0