No. words: 1399; after pruning: 1373


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:972)  409  0.00 0.24 0.00  USDA011F_F08_BG607523Ld08P017H06P017H12F1_054.ab1      269   693 (0)  C USDA011R_F08_BG607523Ld08P017H06P017H12R1_054.ab1   (0)   706   281 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  210 nodes

 107 str. conn. components

Path
    1    USDA011F_F08_BG607523Ld08P017H06P017H12F1_054.ab1     1 
  344  C USDA011R_F08_BG607523Ld08P017H06P017H12R1_054.ab1   630 
  348    USDA011F_F08_BG607523Ld08P017H06P017H12F1_054.ab1   348 
  380  C USDA011R_F08_BG607523Ld08P017H06P017H12R1_054.ab1   594 
  388    USDA011F_F08_BG607523Ld08P017H06P017H12F1_054.ab1   388 
  412  C USDA011R_F08_BG607523Ld08P017H06P017H12R1_054.ab1   562 
  424    USDA011F_F08_BG607523Ld08P017H06P017H12F1_054.ab1   424 
  432  C USDA011R_F08_BG607523Ld08P017H06P017H12R1_054.ab1   542 
Contig length: old 973, new 973

Contig length: old 973, new 973
New start: 0