No. words: 1551; after pruning: 1525


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.2 (1,1:1047)  490  0.00 0.00 0.00  USDA011F_G08_BG607523Ld09P017H06P017H12F1_052.ab1      263   765 (0)  C USDA011R_G08_BG607523Ld09P017H06P017H12R1_052.ab1   (0)   786   284 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1    USDA011F_G08_BG607523Ld09P017H06P017H12F1_052.ab1     1 
  406  C USDA011R_G08_BG607523Ld09P017H06P017H12R1_052.ab1   643 
  410    USDA011F_G08_BG607523Ld09P017H06P017H12F1_052.ab1   410 
  422  C USDA011R_G08_BG607523Ld09P017H06P017H12R1_052.ab1   627 
  450    USDA011F_G08_BG607523Ld09P017H06P017H12F1_052.ab1   450 
  454  C USDA011R_G08_BG607523Ld09P017H06P017H12R1_052.ab1   595 
  486    USDA011F_G08_BG607523Ld09P017H06P017H12F1_052.ab1   486 
  494  C USDA011R_G08_BG607523Ld09P017H06P017H12R1_052.ab1   555 
Contig length: old 1048, new 1048

Contig length: old 1048, new 1048
New start: 0