No. words: 1587; after pruning: 1561


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.8 (1,1:1100)  472  0.00 0.00 0.00  USDA011F_H08_BG607523Ld10P017H06P017H12F1_050.ab1      291   776 (0)  C USDA011R_H08_BG607523Ld10P017H06P017H12R1_050.ab1   (0)   811   326 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1    USDA011F_H08_BG607523Ld10P017H06P017H12F1_050.ab1     1 
  430  C USDA011R_H08_BG607523Ld10P017H06P017H12R1_050.ab1   672 
  434    USDA011F_H08_BG607523Ld10P017H06P017H12F1_050.ab1   434 
  478  C USDA011R_H08_BG607523Ld10P017H06P017H12R1_050.ab1   624 
  486    USDA011F_H08_BG607523Ld10P017H06P017H12F1_050.ab1   486 
  490  C USDA011R_H08_BG607523Ld10P017H06P017H12R1_050.ab1   612 
  510    USDA011F_H08_BG607523Ld10P017H06P017H12F1_050.ab1   510 
  514  C USDA011R_H08_BG607523Ld10P017H06P017H12R1_050.ab1   588 
  522    USDA011F_H08_BG607523Ld10P017H06P017H12F1_050.ab1   522 
  542  C USDA011R_H08_BG607523Ld10P017H06P017H12R1_050.ab1   560 
Contig length: old 1101, new 1101

Contig length: old 1101, new 1101
New start: 0