No. words: 1588; after pruning: 1548


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:1118)  453  0.21 0.00 0.00  USDA011F_A07_BG607523Tu01P017H06P017H12F1_063.ab1      307   775 (0)  C USDA011R_A07_BG607523Tu01P017H06P017H12R1_063.ab1   (0)   813   345 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1    USDA011F_A07_BG607523Tu01P017H06P017H12F1_063.ab1     1 
  422  C USDA011R_A07_BG607523Tu01P017H06P017H12R1_063.ab1   698 
  430    USDA011F_A07_BG607523Tu01P017H06P017H12F1_063.ab1   430 
  434  C USDA011R_A07_BG607523Tu01P017H06P017H12R1_063.ab1   686 
  450    USDA011F_A07_BG607523Tu01P017H06P017H12F1_063.ab1   450 
  462  C USDA011R_A07_BG607523Tu01P017H06P017H12R1_063.ab1   658 
  466    USDA011F_A07_BG607523Tu01P017H06P017H12F1_063.ab1   466 
  498  C USDA011R_A07_BG607523Tu01P017H06P017H12R1_063.ab1   622 
Contig length: old 1119, new 1119

Contig length: old 1119, new 1119
New start: 0