No. words: 1476; after pruning: 1450


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.1 (1,1:1049)  400  0.47 0.24 0.00  USDA011F_B07_BG607523Tu02P017H06P017H12F1_061.ab1      314   738 (0)  C USDA011R_B07_BG607523Tu02P017H06P017H12R1_061.ab1   (0)   738   313 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  206 nodes

 105 str. conn. components

Path
    1    USDA011F_B07_BG607523Tu02P017H06P017H12F1_061.ab1     1 
  465  C USDA011R_B07_BG607523Tu02P017H06P017H12R1_061.ab1   586 
  477    USDA011F_B07_BG607523Tu02P017H06P017H12F1_061.ab1   477 
  509  C USDA011R_B07_BG607523Tu02P017H06P017H12R1_061.ab1   542 
  529    USDA011F_B07_BG607523Tu02P017H06P017H12F1_061.ab1   529 
  533  C USDA011R_B07_BG607523Tu02P017H06P017H12R1_061.ab1   518 
Contig length: old 1050, new 1050

Contig length: old 1050, new 1050
New start: 0