No. words: 1192; after pruning: 1166


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 11.8 (1,1:560)  539  0.00 0.00 0.00  USDA002F_C11_BM137959As01P004G03F09F1_082.ab1        1   560 (45)  C USDA002R_C11_BM137959As01P004G03F09R1_082.ab1   (26)   561     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C USDA002R_C11_BM137959As01P004G03F09R1_082.ab1   587 
   42    USDA002F_C11_BM137959As01P004G03F09F1_082.ab1    16 
   54  C USDA002R_C11_BM137959As01P004G03F09R1_082.ab1   534 
   58    USDA002F_C11_BM137959As01P004G03F09F1_082.ab1    32 
   70  C USDA002R_C11_BM137959As01P004G03F09R1_082.ab1   518 
   74    USDA002F_C11_BM137959As01P004G03F09F1_082.ab1    48 
   86  C USDA002R_C11_BM137959As01P004G03F09R1_082.ab1   502 
  106    USDA002F_C11_BM137959As01P004G03F09F1_082.ab1    80 
  114  C USDA002R_C11_BM137959As01P004G03F09R1_082.ab1   474 
  122    USDA002F_C11_BM137959As01P004G03F09F1_082.ab1    96 
  146  C USDA002R_C11_BM137959As01P004G03F09R1_082.ab1   442 
  154    USDA002F_C11_BM137959As01P004G03F09F1_082.ab1   128 
  158  C USDA002R_C11_BM137959As01P004G03F09R1_082.ab1   430 
  162    USDA002F_C11_BM137959As01P004G03F09F1_082.ab1   136 
  166  C USDA002R_C11_BM137959As01P004G03F09R1_082.ab1   422 
  170    USDA002F_C11_BM137959As01P004G03F09F1_082.ab1   144 
  194  C USDA002R_C11_BM137959As01P004G03F09R1_082.ab1   394 
  198    USDA002F_C11_BM137959As01P004G03F09F1_082.ab1   172 
  222  C USDA002R_C11_BM137959As01P004G03F09R1_082.ab1   366 
  226    USDA002F_C11_BM137959As01P004G03F09F1_082.ab1   200 
  258  C USDA002R_C11_BM137959As01P004G03F09R1_082.ab1   330 
  278    USDA002F_C11_BM137959As01P004G03F09F1_082.ab1   252 
  302  C USDA002R_C11_BM137959As01P004G03F09R1_082.ab1   286 
  306    USDA002F_C11_BM137959As01P004G03F09F1_082.ab1   280 
  314  C USDA002R_C11_BM137959As01P004G03F09R1_082.ab1   274 
  330    USDA002F_C11_BM137959As01P004G03F09F1_082.ab1   304 
  398  C USDA002R_C11_BM137959As01P004G03F09R1_082.ab1   190 
  402    USDA002F_C11_BM137959As01P004G03F09F1_082.ab1   376 
  414  C USDA002R_C11_BM137959As01P004G03F09R1_082.ab1   174 
  418    USDA002F_C11_BM137959As01P004G03F09F1_082.ab1   392 
  422  C USDA002R_C11_BM137959As01P004G03F09R1_082.ab1   166 
  430    USDA002F_C11_BM137959As01P004G03F09F1_082.ab1   404 
  450  C USDA002R_C11_BM137959As01P004G03F09R1_082.ab1   138 
  454    USDA002F_C11_BM137959As01P004G03F09F1_082.ab1   428 
  506  C USDA002R_C11_BM137959As01P004G03F09R1_082.ab1    82 
  510    USDA002F_C11_BM137959As01P004G03F09F1_082.ab1   484 
  514  C USDA002R_C11_BM137959As01P004G03F09R1_082.ab1    74 
  534    USDA002F_C11_BM137959As01P004G03F09F1_082.ab1   508 
  562  C USDA002R_C11_BM137959As01P004G03F09R1_082.ab1    26 
  574    USDA002F_C11_BM137959As01P004G03F09F1_082.ab1   548 
Contig length: old 631, new 631

Contig length: old 631, new 631
New start: 0