No. words: 1193; after pruning: 1167


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:574)  549  0.00 0.00 0.17  USDA002F_D11_BM137959As02P004G03F09F1_090.ab1        1   575 (24)  C USDA002R_D11_BM137959As02P004G03F09R1_090.ab1   (20)   574     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C USDA002R_D11_BM137959As02P004G03F09R1_090.ab1   594 
   36    USDA002F_D11_BM137959As02P004G03F09F1_090.ab1    16 
   48  C USDA002R_D11_BM137959As02P004G03F09R1_090.ab1   547 
   56    USDA002F_D11_BM137959As02P004G03F09F1_090.ab1    36 
   76  C USDA002R_D11_BM137959As02P004G03F09R1_090.ab1   519 
   80    USDA002F_D11_BM137959As02P004G03F09F1_090.ab1    60 
   92  C USDA002R_D11_BM137959As02P004G03F09R1_090.ab1   503 
   96    USDA002F_D11_BM137959As02P004G03F09F1_090.ab1    76 
  112  C USDA002R_D11_BM137959As02P004G03F09R1_090.ab1   483 
  120    USDA002F_D11_BM137959As02P004G03F09F1_090.ab1   100 
  132  C USDA002R_D11_BM137959As02P004G03F09R1_090.ab1   463 
  136    USDA002F_D11_BM137959As02P004G03F09F1_090.ab1   116 
  140  C USDA002R_D11_BM137959As02P004G03F09R1_090.ab1   455 
  148    USDA002F_D11_BM137959As02P004G03F09F1_090.ab1   128 
  152  C USDA002R_D11_BM137959As02P004G03F09R1_090.ab1   443 
  172    USDA002F_D11_BM137959As02P004G03F09F1_090.ab1   152 
  176  C USDA002R_D11_BM137959As02P004G03F09R1_090.ab1   419 
  180    USDA002F_D11_BM137959As02P004G03F09F1_090.ab1   160 
  188  C USDA002R_D11_BM137959As02P004G03F09R1_090.ab1   407 
  200    USDA002F_D11_BM137959As02P004G03F09F1_090.ab1   180 
  216  C USDA002R_D11_BM137959As02P004G03F09R1_090.ab1   379 
  268    USDA002F_D11_BM137959As02P004G03F09F1_090.ab1   248 
  288  C USDA002R_D11_BM137959As02P004G03F09R1_090.ab1   307 
  292    USDA002F_D11_BM137959As02P004G03F09F1_090.ab1   272 
  296  C USDA002R_D11_BM137959As02P004G03F09R1_090.ab1   299 
  304    USDA002F_D11_BM137959As02P004G03F09F1_090.ab1   284 
  308  C USDA002R_D11_BM137959As02P004G03F09R1_090.ab1   287 
  324    USDA002F_D11_BM137959As02P004G03F09F1_090.ab1   304 
  388  C USDA002R_D11_BM137959As02P004G03F09R1_090.ab1   207 
  400    USDA002F_D11_BM137959As02P004G03F09F1_090.ab1   380 
  420  C USDA002R_D11_BM137959As02P004G03F09R1_090.ab1   175 
  424    USDA002F_D11_BM137959As02P004G03F09F1_090.ab1   404 
  436  C USDA002R_D11_BM137959As02P004G03F09R1_090.ab1   159 
  456    USDA002F_D11_BM137959As02P004G03F09F1_090.ab1   436 
  500  C USDA002R_D11_BM137959As02P004G03F09R1_090.ab1    95 
  504    USDA002F_D11_BM137959As02P004G03F09F1_090.ab1   484 
  524  C USDA002R_D11_BM137959As02P004G03F09R1_090.ab1    71 
  528    USDA002F_D11_BM137959As02P004G03F09F1_090.ab1   508 
Contig length: old 618, new 619

Contig length: old 619, new 619
New start: 0