No. words: 1183; after pruning: 1157


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.1 (1,1:556)  535  0.18 0.00 0.00  USDA002F_E11_BM137959At01P004G03F09F1_083.ab1        1   557 (42)  C USDA002R_E11_BM137959At01P004G03F09R1_083.ab1   (27)   557     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1  C USDA002R_E11_BM137959At01P004G03F09R1_083.ab1   584 
   43    USDA002F_E11_BM137959At01P004G03F09F1_083.ab1    16 
   55  C USDA002R_E11_BM137959At01P004G03F09R1_083.ab1   530 
   83    USDA002F_E11_BM137959At01P004G03F09F1_083.ab1    56 
   87  C USDA002R_E11_BM137959At01P004G03F09R1_083.ab1   498 
   91    USDA002F_E11_BM137959At01P004G03F09F1_083.ab1    64 
   95  C USDA002R_E11_BM137959At01P004G03F09R1_083.ab1   490 
  107    USDA002F_E11_BM137959At01P004G03F09F1_083.ab1    80 
  111  C USDA002R_E11_BM137959At01P004G03F09R1_083.ab1   474 
  127    USDA002F_E11_BM137959At01P004G03F09F1_083.ab1   100 
  135  C USDA002R_E11_BM137959At01P004G03F09R1_083.ab1   450 
  151    USDA002F_E11_BM137959At01P004G03F09F1_083.ab1   124 
  159  C USDA002R_E11_BM137959At01P004G03F09R1_083.ab1   426 
  163    USDA002F_E11_BM137959At01P004G03F09F1_083.ab1   136 
  171  C USDA002R_E11_BM137959At01P004G03F09R1_083.ab1   414 
  183    USDA002F_E11_BM137959At01P004G03F09F1_083.ab1   156 
  195  C USDA002R_E11_BM137959At01P004G03F09R1_083.ab1   390 
  207    USDA002F_E11_BM137959At01P004G03F09F1_083.ab1   180 
  271  C USDA002R_E11_BM137959At01P004G03F09R1_083.ab1   314 
  275    USDA002F_E11_BM137959At01P004G03F09F1_083.ab1   248 
  291  C USDA002R_E11_BM137959At01P004G03F09R1_083.ab1   294 
  311    USDA002F_E11_BM137959At01P004G03F09F1_083.ab1   284 
  315  C USDA002R_E11_BM137959At01P004G03F09R1_083.ab1   270 
  331    USDA002F_E11_BM137959At01P004G03F09F1_083.ab1   304 
  391  C USDA002R_E11_BM137959At01P004G03F09R1_083.ab1   194 
  407    USDA002F_E11_BM137959At01P004G03F09F1_083.ab1   380 
  411  C USDA002R_E11_BM137959At01P004G03F09R1_083.ab1   174 
  415    USDA002F_E11_BM137959At01P004G03F09F1_083.ab1   388 
  423  C USDA002R_E11_BM137959At01P004G03F09R1_083.ab1   162 
  427    USDA002F_E11_BM137959At01P004G03F09F1_083.ab1   400 
  447  C USDA002R_E11_BM137959At01P004G03F09R1_083.ab1   138 
  455    USDA002F_E11_BM137959At01P004G03F09F1_083.ab1   428 
  483  C USDA002R_E11_BM137959At01P004G03F09R1_083.ab1   102 
  487    USDA002F_E11_BM137959At01P004G03F09F1_083.ab1   460 
  527  C USDA002R_E11_BM137959At01P004G03F09R1_083.ab1    58 
  535    USDA002F_E11_BM137959At01P004G03F09F1_083.ab1   508 
  559  C USDA002R_E11_BM137959At01P004G03F09R1_083.ab1    26 
  571    USDA002F_E11_BM137959At01P004G03F09F1_083.ab1   544 
Contig length: old 626, new 626

Contig length: old 626, new 626
New start: 0