No. words: 1193; after pruning: 1167


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.0 (1,1:575)  554  0.00 0.00 0.17  USDA002F_F11_BM137959At02P004G03F09F1_091.ab1        1   576 (19)  C USDA002R_F11_BM137959At02P004G03F09R1_091.ab1   (23)   575     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C USDA002R_F11_BM137959At02P004G03F09R1_091.ab1   598 
   39    USDA002F_F11_BM137959At02P004G03F09F1_091.ab1    16 
   51  C USDA002R_F11_BM137959At02P004G03F09R1_091.ab1   548 
   67    USDA002F_F11_BM137959At02P004G03F09F1_091.ab1    44 
   75  C USDA002R_F11_BM137959At02P004G03F09R1_091.ab1   524 
   83    USDA002F_F11_BM137959At02P004G03F09F1_091.ab1    60 
   91  C USDA002R_F11_BM137959At02P004G03F09R1_091.ab1   508 
   95    USDA002F_F11_BM137959At02P004G03F09F1_091.ab1    72 
  111  C USDA002R_F11_BM137959At02P004G03F09R1_091.ab1   488 
  127    USDA002F_F11_BM137959At02P004G03F09F1_091.ab1   104 
  135  C USDA002R_F11_BM137959At02P004G03F09R1_091.ab1   464 
  151    USDA002F_F11_BM137959At02P004G03F09F1_091.ab1   128 
  171  C USDA002R_F11_BM137959At02P004G03F09R1_091.ab1   428 
  187    USDA002F_F11_BM137959At02P004G03F09F1_091.ab1   164 
  191  C USDA002R_F11_BM137959At02P004G03F09R1_091.ab1   408 
  203    USDA002F_F11_BM137959At02P004G03F09F1_091.ab1   180 
  267  C USDA002R_F11_BM137959At02P004G03F09R1_091.ab1   332 
  327    USDA002F_F11_BM137959At02P004G03F09F1_091.ab1   304 
  391  C USDA002R_F11_BM137959At02P004G03F09R1_091.ab1   208 
  427    USDA002F_F11_BM137959At02P004G03F09F1_091.ab1   404 
  435  C USDA002R_F11_BM137959At02P004G03F09R1_091.ab1   164 
  439    USDA002F_F11_BM137959At02P004G03F09F1_091.ab1   416 
  455  C USDA002R_F11_BM137959At02P004G03F09R1_091.ab1   144 
  459    USDA002F_F11_BM137959At02P004G03F09F1_091.ab1   436 
  463  C USDA002R_F11_BM137959At02P004G03F09R1_091.ab1   136 
  471    USDA002F_F11_BM137959At02P004G03F09F1_091.ab1   448 
  479  C USDA002R_F11_BM137959At02P004G03F09R1_091.ab1   120 
  487    USDA002F_F11_BM137959At02P004G03F09F1_091.ab1   464 
  495  C USDA002R_F11_BM137959At02P004G03F09R1_091.ab1   104 
  507    USDA002F_F11_BM137959At02P004G03F09F1_091.ab1   484 
  527  C USDA002R_F11_BM137959At02P004G03F09R1_091.ab1    72 
  531    USDA002F_F11_BM137959At02P004G03F09F1_091.ab1   508 
  559  C USDA002R_F11_BM137959At02P004G03F09R1_091.ab1    40 
  567    USDA002F_F11_BM137959At02P004G03F09F1_091.ab1   544 
  571  C USDA002R_F11_BM137959At02P004G03F09R1_091.ab1    28 
  575    USDA002F_F11_BM137959At02P004G03F09F1_091.ab1   552 
Contig length: old 617, new 618

Contig length: old 618, new 618
New start: 0