No. words: 1444; after pruning: 1418


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    8    0.0 9.1 (1,1:605)  568  0.00 0.17 0.17  USDA002F_G11_BM137959Ld01P004D03D09F1_084.ab1        9   605 (105)  C USDA002R_G11_BM137959Ld01P004D03D09R1_084.ab1   (136)   598     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 8       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1  C USDA002R_G11_BM137959Ld01P004D03D09R1_084.ab1   734 
  161    USDA002F_G11_BM137959Ld01P004D03D09F1_084.ab1    32 
  173  C USDA002R_G11_BM137959Ld01P004D03D09R1_084.ab1   562 
  185    USDA002F_G11_BM137959Ld01P004D03D09F1_084.ab1    56 
  201  C USDA002R_G11_BM137959Ld01P004D03D09R1_084.ab1   534 
  225    USDA002F_G11_BM137959Ld01P004D03D09F1_084.ab1    96 
  233  C USDA002R_G11_BM137959Ld01P004D03D09R1_084.ab1   502 
  245    USDA002F_G11_BM137959Ld01P004D03D09F1_084.ab1   116 
  253  C USDA002R_G11_BM137959Ld01P004D03D09R1_084.ab1   482 
  261    USDA002F_G11_BM137959Ld01P004D03D09F1_084.ab1   132 
  265  C USDA002R_G11_BM137959Ld01P004D03D09R1_084.ab1   470 
  273    USDA002F_G11_BM137959Ld01P004D03D09F1_084.ab1   144 
  281  C USDA002R_G11_BM137959Ld01P004D03D09R1_084.ab1   454 
  305    USDA002F_G11_BM137959Ld01P004D03D09F1_084.ab1   176 
  313  C USDA002R_G11_BM137959Ld01P004D03D09R1_084.ab1   422 
  325    USDA002F_G11_BM137959Ld01P004D03D09F1_084.ab1   196 
  341  C USDA002R_G11_BM137959Ld01P004D03D09R1_084.ab1   394 
  345    USDA002F_G11_BM137959Ld01P004D03D09F1_084.ab1   216 
  377  C USDA002R_G11_BM137959Ld01P004D03D09R1_084.ab1   358 
  393    USDA002F_G11_BM137959Ld01P004D03D09F1_084.ab1   264 
  421  C USDA002R_G11_BM137959Ld01P004D03D09R1_084.ab1   314 
  449    USDA002F_G11_BM137959Ld01P004D03D09F1_084.ab1   320 
  469  C USDA002R_G11_BM137959Ld01P004D03D09R1_084.ab1   266 
  477    USDA002F_G11_BM137959Ld01P004D03D09F1_084.ab1   348 
  481  C USDA002R_G11_BM137959Ld01P004D03D09R1_084.ab1   254 
  537    USDA002F_G11_BM137959Ld01P004D03D09F1_084.ab1   408 
  545  C USDA002R_G11_BM137959Ld01P004D03D09R1_084.ab1   190 
  573    USDA002F_G11_BM137959Ld01P004D03D09F1_084.ab1   444 
  577  C USDA002R_G11_BM137959Ld01P004D03D09R1_084.ab1   158 
  581    USDA002F_G11_BM137959Ld01P004D03D09F1_084.ab1   452 
  593  C USDA002R_G11_BM137959Ld01P004D03D09R1_084.ab1   142 
  601    USDA002F_G11_BM137959Ld01P004D03D09F1_084.ab1   472 
  641  C USDA002R_G11_BM137959Ld01P004D03D09R1_084.ab1    94 
  657    USDA002F_G11_BM137959Ld01P004D03D09F1_084.ab1   528 
  677  C USDA002R_G11_BM137959Ld01P004D03D09R1_084.ab1    58 
  689    USDA002F_G11_BM137959Ld01P004D03D09F1_084.ab1   560 
Contig length: old 838, new 839

Contig length: old 839, new 839
New start: 0