No. words: 1388; after pruning: 1362


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.4 (1,1:580)  537  0.86 0.00 0.34  USDA002F_A12_BM137959Ld03P004G03F09F1_085.ab1        1   581 (74)  C USDA002R_A12_BM137959Ld03P004G03F09R1_085.ab1   (153)   580     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1  C USDA002R_A12_BM137959Ld03P004G03F09R1_085.ab1   733 
  165    USDA002F_A12_BM137959Ld03P004G03F09F1_085.ab1    12 
  173  C USDA002R_A12_BM137959Ld03P004G03F09R1_085.ab1   561 
  181    USDA002F_A12_BM137959Ld03P004G03F09F1_085.ab1    28 
  197  C USDA002R_A12_BM137959Ld03P004G03F09R1_085.ab1   537 
  201    USDA002F_A12_BM137959Ld03P004G03F09F1_085.ab1    48 
  213  C USDA002R_A12_BM137959Ld03P004G03F09R1_085.ab1   521 
  229    USDA002F_A12_BM137959Ld03P004G03F09F1_085.ab1    76 
  233  C USDA002R_A12_BM137959Ld03P004G03F09R1_085.ab1   501 
  245    USDA002F_A12_BM137959Ld03P004G03F09F1_085.ab1    92 
  276  C USDA002R_A12_BM137959Ld03P004G03F09R1_085.ab1   458 
  308    USDA002F_A12_BM137959Ld03P004G03F09F1_085.ab1   155 
  312  C USDA002R_A12_BM137959Ld03P004G03F09R1_085.ab1   422 
  324    USDA002F_A12_BM137959Ld03P004G03F09F1_085.ab1   171 
  352  C USDA002R_A12_BM137959Ld03P004G03F09R1_085.ab1   382 
  395    USDA002F_A12_BM137959Ld03P004G03F09F1_085.ab1   242 
  419  C USDA002R_A12_BM137959Ld03P004G03F09R1_085.ab1   315 
  427    USDA002F_A12_BM137959Ld03P004G03F09F1_085.ab1   274 
  431  C USDA002R_A12_BM137959Ld03P004G03F09R1_085.ab1   303 
  447    USDA002F_A12_BM137959Ld03P004G03F09F1_085.ab1   294 
  559  C USDA002R_A12_BM137959Ld03P004G03F09R1_085.ab1   175 
  583    USDA002F_A12_BM137959Ld03P004G03F09F1_085.ab1   430 
  647  C USDA002R_A12_BM137959Ld03P004G03F09R1_085.ab1    87 
  655    USDA002F_A12_BM137959Ld03P004G03F09F1_085.ab1   502 
  683  C USDA002R_A12_BM137959Ld03P004G03F09R1_085.ab1    51 
  687    USDA002F_A12_BM137959Ld03P004G03F09F1_085.ab1   534 
  725  C USDA002R_A12_BM137959Ld03P004G03F09R1_085.ab1    11 
  729    USDA002F_A12_BM137959Ld03P004G03F09F1_085.ab1   576 
Contig length: old 807, new 808

Contig length: old 808, new 808
New start: 0 
S Change at: 268; seg lengths: entry 1, contig 1