No. words: 1280; after pruning: 1254


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   79    0.0 5.5 (1,1:602)  458  0.41 0.00 0.41  USDA002F_B12_BM137959Ld04P004G03F09F1_093.ab1      115   605 (107)  C USDA002R_B12_BM137959Ld04P004G03F09R1_093.ab1   (79)   489     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
79       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1    USDA002F_B12_BM137959Ld04P004G03F09F1_093.ab1     1 
  126  C USDA002R_B12_BM137959Ld04P004G03F09R1_093.ab1   478 
  134    USDA002F_B12_BM137959Ld04P004G03F09F1_093.ab1   134 
  138  C USDA002R_B12_BM137959Ld04P004G03F09R1_093.ab1   466 
  142    USDA002F_B12_BM137959Ld04P004G03F09F1_093.ab1   142 
  150  C USDA002R_B12_BM137959Ld04P004G03F09R1_093.ab1   454 
  178    USDA002F_B12_BM137959Ld04P004G03F09F1_093.ab1   178 
  186  C USDA002R_B12_BM137959Ld04P004G03F09R1_093.ab1   418 
  198    USDA002F_B12_BM137959Ld04P004G03F09F1_093.ab1   198 
  210  C USDA002R_B12_BM137959Ld04P004G03F09R1_093.ab1   394 
  218    USDA002F_B12_BM137959Ld04P004G03F09F1_093.ab1   218 
  262  C USDA002R_B12_BM137959Ld04P004G03F09R1_093.ab1   342 
  266    USDA002F_B12_BM137959Ld04P004G03F09F1_093.ab1   266 
  294  C USDA002R_B12_BM137959Ld04P004G03F09R1_093.ab1   310 
  322    USDA002F_B12_BM137959Ld04P004G03F09F1_093.ab1   322 
  378  C USDA002R_B12_BM137959Ld04P004G03F09R1_093.ab1   226 
  402    USDA002F_B12_BM137959Ld04P004G03F09F1_093.ab1   402 
  414  C USDA002R_B12_BM137959Ld04P004G03F09R1_093.ab1   190 
  454    USDA002F_B12_BM137959Ld04P004G03F09F1_093.ab1   454 
  462  C USDA002R_B12_BM137959Ld04P004G03F09R1_093.ab1   142 
  470    USDA002F_B12_BM137959Ld04P004G03F09F1_093.ab1   470 
  494  C USDA002R_B12_BM137959Ld04P004G03F09R1_093.ab1   110 
  498    USDA002F_B12_BM137959Ld04P004G03F09F1_093.ab1   498 
  510  C USDA002R_B12_BM137959Ld04P004G03F09R1_093.ab1    94 
  514    USDA002F_B12_BM137959Ld04P004G03F09F1_093.ab1   514 
  518  C USDA002R_B12_BM137959Ld04P004G03F09R1_093.ab1    86 
  522    USDA002F_B12_BM137959Ld04P004G03F09F1_093.ab1   522 
  526  C USDA002R_B12_BM137959Ld04P004G03F09R1_093.ab1    78 
  530    USDA002F_B12_BM137959Ld04P004G03F09F1_093.ab1   530 
  550  C USDA002R_B12_BM137959Ld04P004G03F09R1_093.ab1    54 
  562    USDA002F_B12_BM137959Ld04P004G03F09F1_093.ab1   562 
Contig length: old 712, new 712

Contig length: old 712, new 712
New start: 0