No. words: 1407; after pruning: 1381


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.1 (1,1:579)  555  0.00 0.00 0.17  USDA002F_C12_BM137959Ld05P004G03F09F1_086.ab1        1   580 (102)  C USDA002R_C12_BM137959Ld05P004G03F09R1_086.ab1   (146)   579     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1  C USDA002R_C12_BM137959Ld05P004G03F09R1_086.ab1   725 
  154    USDA002F_C12_BM137959Ld05P004G03F09F1_086.ab1     8 
  166  C USDA002R_C12_BM137959Ld05P004G03F09R1_086.ab1   560 
  174    USDA002F_C12_BM137959Ld05P004G03F09F1_086.ab1    28 
  178  C USDA002R_C12_BM137959Ld05P004G03F09R1_086.ab1   548 
  186    USDA002F_C12_BM137959Ld05P004G03F09F1_086.ab1    40 
  194  C USDA002R_C12_BM137959Ld05P004G03F09R1_086.ab1   532 
  242    USDA002F_C12_BM137959Ld05P004G03F09F1_086.ab1    96 
  250  C USDA002R_C12_BM137959Ld05P004G03F09R1_086.ab1   476 
  254    USDA002F_C12_BM137959Ld05P004G03F09F1_086.ab1   108 
  258  C USDA002R_C12_BM137959Ld05P004G03F09R1_086.ab1   468 
  266    USDA002F_C12_BM137959Ld05P004G03F09F1_086.ab1   120 
  274  C USDA002R_C12_BM137959Ld05P004G03F09R1_086.ab1   452 
  302    USDA002F_C12_BM137959Ld05P004G03F09F1_086.ab1   156 
  306  C USDA002R_C12_BM137959Ld05P004G03F09R1_086.ab1   420 
  318    USDA002F_C12_BM137959Ld05P004G03F09F1_086.ab1   172 
  370  C USDA002R_C12_BM137959Ld05P004G03F09R1_086.ab1   356 
  378    USDA002F_C12_BM137959Ld05P004G03F09F1_086.ab1   232 
  386  C USDA002R_C12_BM137959Ld05P004G03F09R1_086.ab1   340 
  442    USDA002F_C12_BM137959Ld05P004G03F09F1_086.ab1   296 
  462  C USDA002R_C12_BM137959Ld05P004G03F09R1_086.ab1   264 
  530    USDA002F_C12_BM137959Ld05P004G03F09F1_086.ab1   384 
  538  C USDA002R_C12_BM137959Ld05P004G03F09R1_086.ab1   188 
  574    USDA002F_C12_BM137959Ld05P004G03F09F1_086.ab1   428 
  586  C USDA002R_C12_BM137959Ld05P004G03F09R1_086.ab1   140 
  590    USDA002F_C12_BM137959Ld05P004G03F09F1_086.ab1   444 
  638  C USDA002R_C12_BM137959Ld05P004G03F09R1_086.ab1    88 
  650    USDA002F_C12_BM137959Ld05P004G03F09F1_086.ab1   504 
  670  C USDA002R_C12_BM137959Ld05P004G03F09R1_086.ab1    56 
  682    USDA002F_C12_BM137959Ld05P004G03F09F1_086.ab1   536 
  718  C USDA002R_C12_BM137959Ld05P004G03F09R1_086.ab1     9 
  722    USDA002F_C12_BM137959Ld05P004G03F09F1_086.ab1   576 
Contig length: old 827, new 828

Contig length: old 828, new 828
New start: 0