No. words: 1419; after pruning: 1393


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.9 (1,1:578)  542  0.52 0.00 0.34  USDA002F_D12_BM137959Ld06P004G03F09F1_094.ab1        1   580 (110)  C USDA002R_D12_BM137959Ld06P004G03F09R1_094.ab1   (151)   578     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C USDA002R_D12_BM137959Ld06P004G03F09R1_094.ab1   729 
  216    USDA002F_D12_BM137959Ld06P004G03F09F1_094.ab1    65 
  232  C USDA002R_D12_BM137959Ld06P004G03F09R1_094.ab1   498 
  244    USDA002F_D12_BM137959Ld06P004G03F09F1_094.ab1    93 
  252  C USDA002R_D12_BM137959Ld06P004G03F09R1_094.ab1   478 
  260    USDA002F_D12_BM137959Ld06P004G03F09F1_094.ab1   109 
  264  C USDA002R_D12_BM137959Ld06P004G03F09R1_094.ab1   466 
  268    USDA002F_D12_BM137959Ld06P004G03F09F1_094.ab1   117 
  276  C USDA002R_D12_BM137959Ld06P004G03F09R1_094.ab1   454 
  280    USDA002F_D12_BM137959Ld06P004G03F09F1_094.ab1   129 
  284  C USDA002R_D12_BM137959Ld06P004G03F09R1_094.ab1   446 
  296    USDA002F_D12_BM137959Ld06P004G03F09F1_094.ab1   145 
  312  C USDA002R_D12_BM137959Ld06P004G03F09R1_094.ab1   418 
  328    USDA002F_D12_BM137959Ld06P004G03F09F1_094.ab1   177 
  376  C USDA002R_D12_BM137959Ld06P004G03F09R1_094.ab1   354 
  384    USDA002F_D12_BM137959Ld06P004G03F09F1_094.ab1   233 
  388  C USDA002R_D12_BM137959Ld06P004G03F09R1_094.ab1   342 
  396    USDA002F_D12_BM137959Ld06P004G03F09F1_094.ab1   245 
  408  C USDA002R_D12_BM137959Ld06P004G03F09R1_094.ab1   322 
  448    USDA002F_D12_BM137959Ld06P004G03F09F1_094.ab1   297 
  504  C USDA002R_D12_BM137959Ld06P004G03F09R1_094.ab1   226 
  524    USDA002F_D12_BM137959Ld06P004G03F09F1_094.ab1   373 
  528  C USDA002R_D12_BM137959Ld06P004G03F09R1_094.ab1   202 
  544    USDA002F_D12_BM137959Ld06P004G03F09F1_094.ab1   393 
  552  C USDA002R_D12_BM137959Ld06P004G03F09R1_094.ab1   178 
  556    USDA002F_D12_BM137959Ld06P004G03F09F1_094.ab1   405 
  649  C USDA002R_D12_BM137959Ld06P004G03F09R1_094.ab1    81 
  661    USDA002F_D12_BM137959Ld06P004G03F09F1_094.ab1   510 
  677  C USDA002R_D12_BM137959Ld06P004G03F09R1_094.ab1    53 
  689    USDA002F_D12_BM137959Ld06P004G03F09F1_094.ab1   538 
Contig length: old 840, new 841

Contig length: old 841, new 841
New start: 0