No. words: 1422; after pruning: 1396


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 10.2 (1,1:599)  559  0.17 0.17 0.34  USDA002F_E12_BM137959Ld07P004G03F09F1_087.ab1        6   601 (102)  C USDA002R_E12_BM137959Ld07P004G03F09R1_087.ab1   (124)   595     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C USDA002R_E12_BM137959Ld07P004G03F09R1_087.ab1   719 
  152    USDA002F_E12_BM137959Ld07P004G03F09F1_087.ab1    32 
  160  C USDA002R_E12_BM137959Ld07P004G03F09R1_087.ab1   560 
  176    USDA002F_E12_BM137959Ld07P004G03F09F1_087.ab1    56 
  180  C USDA002R_E12_BM137959Ld07P004G03F09R1_087.ab1   540 
  184    USDA002F_E12_BM137959Ld07P004G03F09F1_087.ab1    64 
  188  C USDA002R_E12_BM137959Ld07P004G03F09R1_087.ab1   532 
  192    USDA002F_E12_BM137959Ld07P004G03F09F1_087.ab1    72 
  200  C USDA002R_E12_BM137959Ld07P004G03F09R1_087.ab1   520 
  212    USDA002F_E12_BM137959Ld07P004G03F09F1_087.ab1    92 
  220  C USDA002R_E12_BM137959Ld07P004G03F09R1_087.ab1   500 
  236    USDA002F_E12_BM137959Ld07P004G03F09F1_087.ab1   116 
  240  C USDA002R_E12_BM137959Ld07P004G03F09R1_087.ab1   480 
  248    USDA002F_E12_BM137959Ld07P004G03F09F1_087.ab1   128 
  252  C USDA002R_E12_BM137959Ld07P004G03F09R1_087.ab1   468 
  260    USDA002F_E12_BM137959Ld07P004G03F09F1_087.ab1   140 
  276  C USDA002R_E12_BM137959Ld07P004G03F09R1_087.ab1   444 
  284    USDA002F_E12_BM137959Ld07P004G03F09F1_087.ab1   164 
  288  C USDA002R_E12_BM137959Ld07P004G03F09R1_087.ab1   432 
  296    USDA002F_E12_BM137959Ld07P004G03F09F1_087.ab1   176 
  300  C USDA002R_E12_BM137959Ld07P004G03F09R1_087.ab1   420 
  312    USDA002F_E12_BM137959Ld07P004G03F09F1_087.ab1   192 
  328  C USDA002R_E12_BM137959Ld07P004G03F09R1_087.ab1   392 
  332    USDA002F_E12_BM137959Ld07P004G03F09F1_087.ab1   212 
  368  C USDA002R_E12_BM137959Ld07P004G03F09R1_087.ab1   352 
  384    USDA002F_E12_BM137959Ld07P004G03F09F1_087.ab1   264 
  408  C USDA002R_E12_BM137959Ld07P004G03F09R1_087.ab1   312 
  436    USDA002F_E12_BM137959Ld07P004G03F09F1_087.ab1   316 
  456  C USDA002R_E12_BM137959Ld07P004G03F09R1_087.ab1   264 
  464    USDA002F_E12_BM137959Ld07P004G03F09F1_087.ab1   344 
  496  C USDA002R_E12_BM137959Ld07P004G03F09R1_087.ab1   224 
  560    USDA002F_E12_BM137959Ld07P004G03F09F1_087.ab1   440 
  564  C USDA002R_E12_BM137959Ld07P004G03F09R1_087.ab1   156 
  576    USDA002F_E12_BM137959Ld07P004G03F09F1_087.ab1   456 
  580  C USDA002R_E12_BM137959Ld07P004G03F09R1_087.ab1   140 
  588    USDA002F_E12_BM137959Ld07P004G03F09F1_087.ab1   468 
  624  C USDA002R_E12_BM137959Ld07P004G03F09R1_087.ab1    96 
  644    USDA002F_E12_BM137959Ld07P004G03F09F1_087.ab1   524 
  648  C USDA002R_E12_BM137959Ld07P004G03F09R1_087.ab1    72 
  652    USDA002F_E12_BM137959Ld07P004G03F09F1_087.ab1   532 
  664  C USDA002R_E12_BM137959Ld07P004G03F09R1_087.ab1    56 
  680    USDA002F_E12_BM137959Ld07P004G03F09F1_087.ab1   560 
Contig length: old 822, new 823

Contig length: old 823, new 823
New start: 0