No. words: 1438; after pruning: 1412


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    8    0.0 10.1 (1,1:605)  568  0.00 0.00 0.33  USDA002F_G12_BM137959Ld09P004G03F09F1_088.ab1        9   606 (101)  C USDA002R_G12_BM137959Ld09P004G03F09R1_088.ab1   (134)   597     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 8       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1  C USDA002R_G12_BM137959Ld09P004G03F09R1_088.ab1   731 
  162    USDA002F_G12_BM137959Ld09P004G03F09F1_088.ab1    36 
  170  C USDA002R_G12_BM137959Ld09P004G03F09R1_088.ab1   562 
  182    USDA002F_G12_BM137959Ld09P004G03F09F1_088.ab1    56 
  210  C USDA002R_G12_BM137959Ld09P004G03F09R1_088.ab1   522 
  222    USDA002F_G12_BM137959Ld09P004G03F09F1_088.ab1    96 
  230  C USDA002R_G12_BM137959Ld09P004G03F09R1_088.ab1   502 
  238    USDA002F_G12_BM137959Ld09P004G03F09F1_088.ab1   112 
  242  C USDA002R_G12_BM137959Ld09P004G03F09R1_088.ab1   490 
  246    USDA002F_G12_BM137959Ld09P004G03F09F1_088.ab1   120 
  250  C USDA002R_G12_BM137959Ld09P004G03F09R1_088.ab1   482 
  258    USDA002F_G12_BM137959Ld09P004G03F09F1_088.ab1   132 
  262  C USDA002R_G12_BM137959Ld09P004G03F09R1_088.ab1   470 
  270    USDA002F_G12_BM137959Ld09P004G03F09F1_088.ab1   144 
  274  C USDA002R_G12_BM137959Ld09P004G03F09R1_088.ab1   458 
  294    USDA002F_G12_BM137959Ld09P004G03F09F1_088.ab1   168 
  298  C USDA002R_G12_BM137959Ld09P004G03F09R1_088.ab1   434 
  306    USDA002F_G12_BM137959Ld09P004G03F09F1_088.ab1   180 
  310  C USDA002R_G12_BM137959Ld09P004G03F09R1_088.ab1   422 
  322    USDA002F_G12_BM137959Ld09P004G03F09F1_088.ab1   196 
  338  C USDA002R_G12_BM137959Ld09P004G03F09R1_088.ab1   394 
  342    USDA002F_G12_BM137959Ld09P004G03F09F1_088.ab1   216 
  378  C USDA002R_G12_BM137959Ld09P004G03F09R1_088.ab1   354 
  394    USDA002F_G12_BM137959Ld09P004G03F09F1_088.ab1   268 
  418  C USDA002R_G12_BM137959Ld09P004G03F09R1_088.ab1   314 
  446    USDA002F_G12_BM137959Ld09P004G03F09F1_088.ab1   320 
  466  C USDA002R_G12_BM137959Ld09P004G03F09R1_088.ab1   266 
  478    USDA002F_G12_BM137959Ld09P004G03F09F1_088.ab1   352 
  518  C USDA002R_G12_BM137959Ld09P004G03F09R1_088.ab1   214 
  542    USDA002F_G12_BM137959Ld09P004G03F09F1_088.ab1   416 
  554  C USDA002R_G12_BM137959Ld09P004G03F09R1_088.ab1   178 
  598    USDA002F_G12_BM137959Ld09P004G03F09F1_088.ab1   472 
  646  C USDA002R_G12_BM137959Ld09P004G03F09R1_088.ab1    86 
  654    USDA002F_G12_BM137959Ld09P004G03F09F1_088.ab1   528 
  678  C USDA002R_G12_BM137959Ld09P004G03F09R1_088.ab1    54 
  686    USDA002F_G12_BM137959Ld09P004G03F09F1_088.ab1   560 
Contig length: old 832, new 833

Contig length: old 833, new 833
New start: 0