No. words: 1055; after pruning: 1015


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.9 (1,1:532)  448  1.43 0.00 0.00  USDA002F_A11_BM137959Tu01P004G03F09F1_081.ab1        1   488 (0)  C USDA002R_A11_BM137959Tu01P004G03F09R1_081.ab1   (34)   533    46 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C USDA002R_A11_BM137959Tu01P004G03F09R1_081.ab1   567 
   41    USDA002F_A11_BM137959Tu01P004G03F09F1_081.ab1     7 
  133  C USDA002R_A11_BM137959Tu01P004G03F09R1_081.ab1   435 
  137    USDA002F_A11_BM137959Tu01P004G03F09F1_081.ab1   103 
  237  C USDA002R_A11_BM137959Tu01P004G03F09R1_081.ab1   331 
  241    USDA002F_A11_BM137959Tu01P004G03F09F1_081.ab1   207 
  265  C USDA002R_A11_BM137959Tu01P004G03F09R1_081.ab1   303 
  269    USDA002F_A11_BM137959Tu01P004G03F09F1_081.ab1   235 
  285  C USDA002R_A11_BM137959Tu01P004G03F09R1_081.ab1   283 
  301    USDA002F_A11_BM137959Tu01P004G03F09F1_081.ab1   267 
  305  C USDA002R_A11_BM137959Tu01P004G03F09R1_081.ab1   263 
  309    USDA002F_A11_BM137959Tu01P004G03F09F1_081.ab1   275 
  353  C USDA002R_A11_BM137959Tu01P004G03F09R1_081.ab1   215 
  402    USDA002F_A11_BM137959Tu01P004G03F09F1_081.ab1   368 
  410  C USDA002R_A11_BM137959Tu01P004G03F09R1_081.ab1   158 
  448    USDA002F_A11_BM137959Tu01P004G03F09F1_081.ab1   414 
  452  C USDA002R_A11_BM137959Tu01P004G03F09R1_081.ab1   116 
  488    USDA002F_A11_BM137959Tu01P004G03F09F1_081.ab1   454 
  496  C USDA002R_A11_BM137959Tu01P004G03F09R1_081.ab1    72 
Contig length: old 567, new 567

Contig length: old 567, new 567
New start: 0 
S Change at: 383; seg lengths: entry 1, contig 1
S Change at: 427; seg lengths: entry 1, contig 1