No. words: 1398; after pruning: 1358


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.5 (1,1:652)  644  0.15 0.00 0.00  USDA011F_D01_BM140362As02P017H02P017H08F1_009.ab1        1   653 (47)  C USDA011R_D01_BM140362As02P017H02P017H08R1_009.ab1   (45)   653     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  326 nodes

 165 str. conn. components

Path
    1  C USDA011R_D01_BM140362As02P017H02P017H08R1_009.ab1   698 
   97    USDA011F_D01_BM140362As02P017H02P017H08F1_009.ab1    52 
  113  C USDA011R_D01_BM140362As02P017H02P017H08R1_009.ab1   586 
  117    USDA011F_D01_BM140362As02P017H02P017H08F1_009.ab1    72 
  185  C USDA011R_D01_BM140362As02P017H02P017H08R1_009.ab1   514 
  585    USDA011F_D01_BM140362As02P017H02P017H08F1_009.ab1   540 
  593  C USDA011R_D01_BM140362As02P017H02P017H08R1_009.ab1   106 
  633    USDA011F_D01_BM140362As02P017H02P017H08F1_009.ab1   588 
  637  C USDA011R_D01_BM140362As02P017H02P017H08R1_009.ab1    62 
  679    USDA011F_D01_BM140362As02P017H02P017H08F1_009.ab1   634 
Contig length: old 745, new 745

Contig length: old 745, new 745
New start: 0