No. words: 1433; after pruning: 1407


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 12.5 (1,1:682)  656  0.00 0.44 0.00  USDA011F_E01_BM140362At01P017H02P017H08F1_007.ab1        1   679 (39)  C USDA011R_E01_BM140362At01P017H02P017H08R1_007.ab1   (30)   685     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  332 nodes

 168 str. conn. components

Path
    1  C USDA011R_E01_BM140362At01P017H02P017H08R1_007.ab1   715 
   67    USDA011F_E01_BM140362At01P017H02P017H08F1_007.ab1    34 
   79  C USDA011R_E01_BM140362At01P017H02P017H08R1_007.ab1   637 
   95    USDA011F_E01_BM140362At01P017H02P017H08F1_007.ab1    62 
   99  C USDA011R_E01_BM140362At01P017H02P017H08R1_007.ab1   617 
  107    USDA011F_E01_BM140362At01P017H02P017H08F1_007.ab1    74 
  115  C USDA011R_E01_BM140362At01P017H02P017H08R1_007.ab1   601 
  119    USDA011F_E01_BM140362At01P017H02P017H08F1_007.ab1    86 
  143  C USDA011R_E01_BM140362At01P017H02P017H08R1_007.ab1   573 
  147    USDA011F_E01_BM140362At01P017H02P017H08F1_007.ab1   114 
  163  C USDA011R_E01_BM140362At01P017H02P017H08R1_007.ab1   553 
  475    USDA011F_E01_BM140362At01P017H02P017H08F1_007.ab1   442 
  567  C USDA011R_E01_BM140362At01P017H02P017H08R1_007.ab1   149 
  675    USDA011F_E01_BM140362At01P017H02P017H08F1_007.ab1   642 
  679  C USDA011R_E01_BM140362At01P017H02P017H08R1_007.ab1    37 
  691    USDA011F_E01_BM140362At01P017H02P017H08F1_007.ab1   658 
Contig length: old 750, new 751

Contig length: old 751, new 751
New start: 0