No. words: 1437; after pruning: 1411


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.5 (1,1:679)  663  0.00 0.00 0.15  USDA011F_F01_BM140362At02P017H02P017H08F1_005.ab1        1   680 (32)  C USDA011R_F01_BM140362At02P017H02P017H08R1_005.ab1   (46)   679     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  338 nodes

 171 str. conn. components

Path
    1  C USDA011R_F01_BM140362At02P017H02P017H08R1_005.ab1   725 
  266    USDA011F_F01_BM140362At02P017H02P017H08F1_005.ab1   220 
  494  C USDA011R_F01_BM140362At02P017H02P017H08R1_005.ab1   232 
  598    USDA011F_F01_BM140362At02P017H02P017H08F1_005.ab1   552 
  610  C USDA011R_F01_BM140362At02P017H02P017H08R1_005.ab1   116 
  662    USDA011F_F01_BM140362At02P017H02P017H08F1_005.ab1   616 
  666  C USDA011R_F01_BM140362At02P017H02P017H08R1_005.ab1    60 
  682    USDA011F_F01_BM140362At02P017H02P017H08F1_005.ab1   636 
  686  C USDA011R_F01_BM140362At02P017H02P017H08R1_005.ab1    40 
  694    USDA011F_F01_BM140362At02P017H02P017H08F1_005.ab1   648 
Contig length: old 757, new 758

Contig length: old 758, new 758
New start: 0