No. words: 1628; after pruning: 1602


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 13.9 (1,1:654)  641  0.00 0.00 0.00  USDA011F_A02_BM140362Ld03P017H02P017H08F1_016.ab1        1   652 (144)  C USDA011R_A02_BM140362Ld03P017H02P017H08R1_016.ab1   (177)   655     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1  C USDA011R_A02_BM140362Ld03P017H02P017H08R1_016.ab1   832 
  189    USDA011F_A02_BM140362Ld03P017H02P017H08F1_016.ab1    12 
  193  C USDA011R_A02_BM140362Ld03P017H02P017H08R1_016.ab1   640 
  261    USDA011F_A02_BM140362Ld03P017H02P017H08F1_016.ab1    84 
  265  C USDA011R_A02_BM140362Ld03P017H02P017H08R1_016.ab1   568 
  681    USDA011F_A02_BM140362Ld03P017H02P017H08F1_016.ab1   504 
  725  C USDA011R_A02_BM140362Ld03P017H02P017H08R1_016.ab1   108 
  777    USDA011F_A02_BM140362Ld03P017H02P017H08F1_016.ab1   600 
  789  C USDA011R_A02_BM140362Ld03P017H02P017H08R1_016.ab1    44 
  805    USDA011F_A02_BM140362Ld03P017H02P017H08F1_016.ab1   628 
Contig length: old 973, new 973

Contig length: old 973, new 973
New start: 0