No. words: 1106; after pruning: 1080


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.5 (1,1:677)  260  0.00 1.37 0.68  USDA011F_C02_BM140362Ld05P017H02P017H08F1_012.ab1        1   293 (0)  C USDA011R_C02_BM140362Ld05P017H02P017H08R1_012.ab1   (134)   679   385 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  130 nodes

 67 str. conn. components

Path
    1  C USDA011R_C02_BM140362Ld05P017H02P017H08R1_012.ab1   813 
  175    USDA011F_C02_BM140362Ld05P017H02P017H08F1_012.ab1    39 
  179  C USDA011R_C02_BM140362Ld05P017H02P017H08R1_012.ab1   635 
  195    USDA011F_C02_BM140362Ld05P017H02P017H08F1_012.ab1    59 
  207  C USDA011R_C02_BM140362Ld05P017H02P017H08R1_012.ab1   607 
Contig length: old 813, new 813

Contig length: old 813, new 813
New start: 0