No. words: 909; after pruning: 883


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    7   -3.1 -3.1 (1,1:584)  231  8.36 0.00 0.00  USDA011F_D02_BM140362Ld06P017H02P017H08F1_010.ab1      268   578 (13)  C USDA011R_D02_BM140362Ld06P017H02P017H08R1_010.ab1   (0)   318     8 *
  Worst pair: offset 0 
LLR breakdown: discreps: -9.2 (<20 part: -9.2 (#=26), >20:0.0 (#=0); in HQ: -9.2, out HQ 0.0), match: 6.3  trail: -0.3  total: -3.2  231  8.36 0.00 0.00  USDA011F_D02_BM140362Ld06P017H02P017H08F1_010.ab1      268   578 (13)  C USDA011R_D02_BM140362Ld06P017H02P017H08R1_010.ab1   (0)   318     8 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.1       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  86 nodes

 45 str. conn. components

Path
    1    USDA011F_D02_BM140362Ld06P017H02P017H08F1_010.ab1     1 
  532  C USDA011R_D02_BM140362Ld06P017H02P017H08R1_010.ab1    54 
  544    USDA011F_D02_BM140362Ld06P017H02P017H08F1_010.ab1   544 
  559  C USDA011R_D02_BM140362Ld06P017H02P017H08R1_010.ab1    27 
Contig length: old 591, new 585

Contig length: old 585, new 585
New start: 0 
S Change at: 472; seg lengths: entry 1, contig 1