No. words: 1628; after pruning: 1602


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.6 (1,1:661)  643  0.00 0.30 0.00  USDA011F_G02_BM140362Ld09P017H02P017H08F1_004.ab1        1   661 (145)  C USDA011R_G02_BM140362Ld09P017H02P017H08R1_004.ab1   (159)   663     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  326 nodes

 165 str. conn. components

Path
    1  C USDA011R_G02_BM140362Ld09P017H02P017H08R1_004.ab1   822 
  181    USDA011F_G02_BM140362Ld09P017H02P017H08F1_004.ab1    20 
  185  C USDA011R_G02_BM140362Ld09P017H02P017H08R1_004.ab1   638 
  197    USDA011F_G02_BM140362Ld09P017H02P017H08F1_004.ab1    36 
  201  C USDA011R_G02_BM140362Ld09P017H02P017H08R1_004.ab1   622 
  225    USDA011F_G02_BM140362Ld09P017H02P017H08F1_004.ab1    64 
  233  C USDA011R_G02_BM140362Ld09P017H02P017H08R1_004.ab1   590 
  257    USDA011F_G02_BM140362Ld09P017H02P017H08F1_004.ab1    96 
  265  C USDA011R_G02_BM140362Ld09P017H02P017H08R1_004.ab1   558 
  677    USDA011F_G02_BM140362Ld09P017H02P017H08F1_004.ab1   516 
  777  C USDA011R_G02_BM140362Ld09P017H02P017H08R1_004.ab1    46 
  781    USDA011F_G02_BM140362Ld09P017H02P017H08F1_004.ab1   620 
  793  C USDA011R_G02_BM140362Ld09P017H02P017H08R1_004.ab1    30 
  805    USDA011F_G02_BM140362Ld09P017H02P017H08F1_004.ab1   644 
Contig length: old 966, new 967

Contig length: old 967, new 967
New start: 0