No. words: 1630; after pruning: 1604


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 12.1 (1,1:663)  640  0.00 0.30 0.00  USDA011F_H02_BM140362Ld10P017H02P017H08F1_002.ab1        4   662 (170)  C USDA011R_H02_BM140362Ld10P017H02P017H08R1_002.ab1   (136)   662     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1  C USDA011R_H02_BM140362Ld10P017H02P017H08R1_002.ab1   798 
  647    USDA011F_H02_BM140362Ld10P017H02P017H08F1_002.ab1   512 
  751  C USDA011R_H02_BM140362Ld10P017H02P017H08R1_002.ab1    48 
  759    USDA011F_H02_BM140362Ld10P017H02P017H08F1_002.ab1   624 
  767  C USDA011R_H02_BM140362Ld10P017H02P017H08R1_002.ab1    32 
  771    USDA011F_H02_BM140362Ld10P017H02P017H08F1_002.ab1   636 
Contig length: old 966, new 967

Contig length: old 967, new 967
New start: 0