No. words: 1172; after pruning: 1146


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.2 (1,1:551)  494  2.19 0.18 0.18  USDA018F_F11_BM140362Sn24P035E12P017H081F1_085.ab1        1   549 (18)  C USDA018R_F11_BM140362Sn24P035E12P017H081R1_085.ab1   (53)   552     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C USDA018R_F11_BM140362Sn24P035E12P017H081R1_085.ab1   605 
  599    USDA018F_F11_BM140362Sn24P035E12P017H081F1_085.ab1   546 
Contig length: old 620, new 620

Contig length: old 620, new 620
New start: 0