No. words: 1213; after pruning: 1187


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:565)  517  1.76 0.00 0.35  USDA018F_G11_BM140362Sn25P035E12P017H081F1_083.ab1        1   567 (23)  C USDA018R_G11_BM140362Sn25P035E12P017H081R1_083.ab1   (58)   565     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C USDA018R_G11_BM140362Sn25P035E12P017H081R1_083.ab1   623 
  585    USDA018F_G11_BM140362Sn25P035E12P017H081F1_083.ab1   527 
  589  C USDA018R_G11_BM140362Sn25P035E12P017H081R1_083.ab1    35 
  597    USDA018F_G11_BM140362Sn25P035E12P017H081F1_083.ab1   539 
Contig length: old 647, new 648

Contig length: old 648, new 648
New start: 0