No. words: 1206; after pruning: 1166


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:554)  508  1.80 0.00 0.36  USDA018F_A12_BM140362Sn26P035E12P017H081F1_096.ab1        1   556 (35)  C USDA018R_A12_BM140362Sn26P035E12P017H081R1_096.ab1   (61)   554     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C USDA018R_A12_BM140362Sn26P035E12P017H081R1_096.ab1   615 
  201    USDA018F_A12_BM140362Sn26P035E12P017H081F1_096.ab1   140 
  212  C USDA018R_A12_BM140362Sn26P035E12P017H081R1_096.ab1   404 
  596    USDA018F_A12_BM140362Sn26P035E12P017H081F1_096.ab1   535 
Contig length: old 651, new 652

Contig length: old 652, new 652
New start: 0